Gene detail information of Glyur000207s00015914.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G33420.10RING/FYVE/PHD zinc finger superfamily protein
NRXP_007131323.10hypothetical protein PHAVU_011G004000g [Phaseolus vulgaris]
Swissprottr|Q9C810|Y1342_ARATH0PHD finger protein At1g33420
trEMBLtr|V7ACS3|V7ACS3_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW03317.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00207177613181472-


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000207s00015914.1PF00628.24PHD6126579.80E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.405
SRR1783600control1.406
SRR1783602moderate drought stress1.371
SRR1811619moderate drought stress1.409

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.646
DRR006520Root Summer glycyrrhizin high producing strain1.665
DRR006521Root Winter glycyrrhizin high producing strain1.011
DRR006522Root Winter glycyrrhizin high producing strain0.894
DRR006523Root Summer glycyrrhizin low producing strain1.349
DRR006524Root Summer glycyrrhizin low producing strain1.410
DRR006525Leaf Summer glycyrrhizin high producing strain2.853
DRR006526Leaf Summer glycyrrhizin high producing strain2.826

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.691
SRR2868004Drought Stress(Tissue:root)1.986
SRR2967015Control (Tissue:root)1.621

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.890
SRR9715740Leave2.412
SRR9715741Leave2.203
SRR9715739Root0.145
SRR9715742Root0.203
SRR9715743Root0.475

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.354
SRR8749028MeJA induced 9h3.776
SRR8749029MeJA induced 9h4.273
SRR8749030Uninduced7.840
SRR8749031Uninduced10.776
SRR8749032Uninduced8.241

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.105
SRR8400027Control-Root0.995

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved