Gene detail information of Glyur000208s00014261.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15030.3 | 5.00E-28 | TCP family transcription factor 4 |
| NR | XP_004489051.1 | 3.27E-125 | PREDICTED: transcription factor TCP4-like [Cicer arietinum] |
| Swissprot | tr|Q9MAH8|TCP3_ARATH | 4.00E-82 | Transcription factor TCP3 |
| trEMBL | tr|V7CTS6|V7CTS6_PHAVU | 2.00E-118 | Uncharacterized protein {ECO:0000313|EMBL:ESW33592.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00208 | 5670 | 6743 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TCP |
| EAR motif-containing Proteins | TCP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000208s00014261.1 | PF03634.8 | TCP | 18 | 136 | 4.20E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.747 |
| SRR1783600 | control | 5.998 |
| SRR1783602 | moderate drought stress | 5.339 |
| SRR1811619 | moderate drought stress | 5.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.503 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.208 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.371 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.861 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.149 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.482 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 59.115 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 60.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.251 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.462 |
| SRR2967015 | Control (Tissue:root) | 7.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 47.360 |
| SRR9715740 | Leave | 57.499 |
| SRR9715741 | Leave | 44.177 |
| SRR9715739 | Root | 1.862 |
| SRR9715742 | Root | 3.932 |
| SRR9715743 | Root | 4.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.199 |
| SRR8749028 | MeJA induced 9h | 0.273 |
| SRR8749029 | MeJA induced 9h | 0.112 |
| SRR8749030 | Uninduced | 0.418 |
| SRR8749031 | Uninduced | 0.106 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.660 |
| SRR8400027 | Control-Root | 21.739 |