Gene detail information of Glyur000208s00014266.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G22140.22.00E-100PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
NRXP_006591885.12.94E-144PREDICTED: uncharacterized protein LOC100800993 isoform X1 [Glycine max]
Swissprottr|Q710E8|ORC1A_ARATH2.00E-08Origin of replication complex subunit 1A {ECO:0000303|PubMed:16179646}
trEMBLtr|I1LV46|I1LV46_SOYBN1.00E-144Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G35680.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002084547649719-


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003682  chromatin binding

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000208s00014266.1PF01426.13BAH231354.60E-26
Glyur000208s00014266.1PF00628.24PHD1401881.00E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control72.467
SRR1783600control72.413
SRR1783602moderate drought stress66.324
SRR1811619moderate drought stress65.859

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain113.359
DRR006520Root Summer glycyrrhizin high producing strain111.359
DRR006521Root Winter glycyrrhizin high producing strain65.807
DRR006522Root Winter glycyrrhizin high producing strain62.610
DRR006523Root Summer glycyrrhizin low producing strain93.682
DRR006524Root Summer glycyrrhizin low producing strain92.974
DRR006525Leaf Summer glycyrrhizin high producing strain44.266
DRR006526Leaf Summer glycyrrhizin high producing strain43.729

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)82.263
SRR2868004Drought Stress(Tissue:root)69.258
SRR2967015Control (Tissue:root)68.270

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave47.340
SRR9715740Leave47.412
SRR9715741Leave49.114
SRR9715739Root70.876
SRR9715742Root48.465
SRR9715743Root53.818

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h56.667
SRR8749028MeJA induced 9h50.641
SRR8749029MeJA induced 9h50.233
SRR8749030Uninduced40.039
SRR8749031Uninduced17.146
SRR8749032Uninduced25.380

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root72.673
SRR8400027Control-Root71.383

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved