Gene detail information of Glyur000208s00014274.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53190.2 | 5.00E-70 | RING/U-box superfamily protein |
| NR | KEH38658.1 | 0 | zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula] |
| Swissprot | tr|Q9ZQF9|MBR1_ARATH | 3.00E-31 | E3 ubiquitin-protein ligase MBR1 |
| trEMBL | tr|A0A072VB32|A0A072VB32_MEDTR | 0 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH38658.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00208 | 93061 | 96735 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000208s00014274.1 | PF13639.1 | zf-RING_2 | 476 | 519 | 3.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.052 |
| SRR1783600 | control | 37.318 |
| SRR1783602 | moderate drought stress | 29.845 |
| SRR1811619 | moderate drought stress | 29.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.308 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.546 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 55.024 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 53.835 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.229 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 34.775 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.418 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 42.734 |
| SRR2868004 | Drought Stress(Tissue:root) | 48.964 |
| SRR2967015 | Control (Tissue:root) | 47.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 31.244 |
| SRR9715740 | Leave | 27.852 |
| SRR9715741 | Leave | 39.265 |
| SRR9715739 | Root | 27.822 |
| SRR9715742 | Root | 30.783 |
| SRR9715743 | Root | 28.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.513 |
| SRR8749028 | MeJA induced 9h | 104.828 |
| SRR8749029 | MeJA induced 9h | 83.914 |
| SRR8749030 | Uninduced | 33.554 |
| SRR8749031 | Uninduced | 66.566 |
| SRR8749032 | Uninduced | 62.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 45.402 |
| SRR8400027 | Control-Root | 42.559 |