Gene detail information of Glyur000208s00014285.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G15150.11.00E-68RING/U-box superfamily protein
NRAFK42789.11.71E-131unknown [Lotus japonicus]
Swissprottr|Q8GYH7|NSE2_ARATH1.00E-84E3 SUMO-protein ligase MMS21
trEMBLtr|I3SR97|I3SR97_LOTJA6.00E-132Uncharacterized protein {ECO:0000313|EMBL:AFK42789.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00208148792152867-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0000724  double-strand break repair via homologous recombination


cellular_component

GO:0030915  Smc5-Smc6 complex


molecular_function

GO:0019789  SUMO transferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000208s00014285.1PF11789.3zf-Nse1432058.30E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.876
SRR1783600control8.861
SRR1783602moderate drought stress12.131
SRR1811619moderate drought stress12.109

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.014
DRR006520Root Summer glycyrrhizin high producing strain20.625
DRR006521Root Winter glycyrrhizin high producing strain11.654
DRR006522Root Winter glycyrrhizin high producing strain11.165
DRR006523Root Summer glycyrrhizin low producing strain9.449
DRR006524Root Summer glycyrrhizin low producing strain9.140
DRR006525Leaf Summer glycyrrhizin high producing strain8.486
DRR006526Leaf Summer glycyrrhizin high producing strain8.598

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.689
SRR2868004Drought Stress(Tissue:root)8.823
SRR2967015Control (Tissue:root)9.654

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.006
SRR9715740Leave12.528
SRR9715741Leave13.510
SRR9715739Root10.602
SRR9715742Root15.603
SRR9715743Root15.222

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.397
SRR8749028MeJA induced 9h13.271
SRR8749029MeJA induced 9h16.798
SRR8749030Uninduced7.502
SRR8749031Uninduced6.269
SRR8749032Uninduced6.312

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.504
SRR8400027Control-Root26.023

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved