Gene detail information of Glyur000208s00014293.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G71840.13.00E-129transducin family protein / WD-40 repeat family protein
NRKHN00779.10Angio-associated migratory cell protein [Glycine soja]
COGYP_004050921.12.00E-68wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672]
Swissprottr|Q3Y8L7|DAW1_CHLRE3.00E-32Dynein assembly factor with WDR repeat domains 1
trEMBLtr|V4UPM0|V4UPM0_9ROSI7.00E-180Uncharacterized protein {ECO:0000313|EMBL:ESR66220.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00208190346206946+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000208s00014293.3PF00400.27WD4058944.60E-05
Glyur000208s00014293.3PF00400.27WD401041376.40E-09
Glyur000208s00014293.3PF00400.27WD401401784.50E-06
Glyur000208s00014293.3PF00400.27WD401882202.30E-08
Glyur000208s00014293.3PF00400.27WD402362630.043
Glyur000208s00014293.3PF00400.27WD402693071.70E-05
Glyur000208s00014293.3PF00400.27WD403153476.90E-08
Glyur000208s00014293.3PF00400.27WD403513888.00E-09
Glyur000208s00014293.3PF00400.27WD404514878.10E-05
Glyur000208s00014293.3PF00400.27WD404975303.00E-10
Glyur000208s00014293.3PF00400.27WD405455749.60E-07
Glyur000208s00014293.3PF00400.27WD405786151.50E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.415
SRR1783600control19.637
SRR1783602moderate drought stress20.088
SRR1811619moderate drought stress20.036

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.246
DRR006520Root Summer glycyrrhizin high producing strain20.326
DRR006521Root Winter glycyrrhizin high producing strain19.035
DRR006522Root Winter glycyrrhizin high producing strain18.595
DRR006523Root Summer glycyrrhizin low producing strain14.762
DRR006524Root Summer glycyrrhizin low producing strain13.602
DRR006525Leaf Summer glycyrrhizin high producing strain15.926
DRR006526Leaf Summer glycyrrhizin high producing strain15.378

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.374
SRR2868004Drought Stress(Tissue:root)40.365
SRR2967015Control (Tissue:root)40.980

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave38.892
SRR9715740Leave41.996
SRR9715741Leave58.944
SRR9715739Root20.318
SRR9715742Root32.976
SRR9715743Root29.755

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.179
SRR8749028MeJA induced 9h22.655
SRR8749029MeJA induced 9h15.011
SRR8749030Uninduced12.066
SRR8749031Uninduced8.748
SRR8749032Uninduced7.963

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root64.118
SRR8400027Control-Root56.794

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved