Gene detail information of Glyur000208s00014295.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G34260.10FORMS APLOID AND BINUCLEATE CELLS 1A
NRXP_006606196.10PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D-like isoform X2 [Glycine max]
COGYP_183091.14.00E-10chaperonin subunit alpha [Thermococcus kodakarensis KOD1]
Swissprottr|Q9XID0|FAB1D_ARATH0Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D
trEMBLtr|K7N417|K7N417_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G31341.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00208221468229780+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00921PIKFYVE, FAB1 EC:2.7.1.150 Inositol phosphate metabolism map00562
Phosphatidylinositol signaling systemmap04070
Phagosomemap04145
Regulation of actin cytoskeletonmap04810


Gene Ontology

biological_process

GO:0046488  phosphatidylinositol metabolic process


molecular_function

GO:0005524  ATP binding

GO:0016307  phosphatidylinositol phosphate kinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000208s00014295.1PF00118.19Cpn60_TCP12504924.30E-18
Glyur000208s00014295.1PF01504.13PIP5K134215703.80E-63


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.764
SRR1783600control16.974
SRR1783602moderate drought stress12.957
SRR1811619moderate drought stress12.930

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.535
DRR006520Root Summer glycyrrhizin high producing strain12.359
DRR006521Root Winter glycyrrhizin high producing strain9.085
DRR006522Root Winter glycyrrhizin high producing strain8.995
DRR006523Root Summer glycyrrhizin low producing strain20.020
DRR006524Root Summer glycyrrhizin low producing strain19.988
DRR006525Leaf Summer glycyrrhizin high producing strain7.301
DRR006526Leaf Summer glycyrrhizin high producing strain7.255

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.185
SRR2868004Drought Stress(Tissue:root)18.688
SRR2967015Control (Tissue:root)22.414

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.913
SRR9715740Leave12.466
SRR9715741Leave12.213
SRR9715739Root2.125
SRR9715742Root12.473
SRR9715743Root11.031

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.264
SRR8749028MeJA induced 9h6.424
SRR8749029MeJA induced 9h2.567
SRR8749030Uninduced2.278
SRR8749031Uninduced1.001
SRR8749032Uninduced1.213

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.300
SRR8400027Control-Root19.031

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved