Gene detail

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Gene detail information of Glyur000209s00013446.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62400.1	1.00E-179	Protein kinase superfamily protein
NR	XP_007154003.1	0	hypothetical protein PHAVU_003G082800g [Phaseolus vulgaris]
COG	YP_001958461.1	3.00E-40	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	0	Serine/threonine-protein kinase HT1
trEMBL	tr\|V7C735\|V7C735_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW25997.1}

Sequence

Transcript Sequence

>Glyur000209s00013446.1
ATGGCAGGCTCATGNTTCAATGGGCTTCGGTTGTTGAGGTTCAAGAGCAAACCTTTACCAGAGCCTTCTTCTTCTTCATCCAAGACCCGGTTGAATTCCGACGTGGAAAACATGGAAAGGAAGAGATTTGATAGCTTGGAATCATGGTCGATGATATTGGACTCAGAGAATGTGGAGACATGGGAAGCTTCAAAGGAGGATCAGGAGGAATGGACTGCTGATCTTTCTCAGCTTTTCATAGGTAACAAGTTTGCATCTGGTGCTCACAGTAGGATTTACCGTGGGATTTACAAGCAGAGAGCAGTTGCTGTGAAAATGGTGAGGATTCCAACTCAGAATGAGGAGAGAAGAGTCTTGCTTGAACAGCAATTCAAATCTGAGGTGGCTTTGCTTTCACGTCTCTTTCATCCTAACATAGTCCAGTTTATTGCAGCCTGTAAAAAACCTCCCGTGTACTGTATCATAACAGAATACATGTCACAAGGAACTCTGAGGATGTACCTGAACAAGAAAGAGCCATACTCTCTTTCAGTAGAAACCATACTAAGGTTAGCACTTGACATATCTAGGGGCATGGAGTACCTTCATTCGCAAGGTGTGATCCACAGAGACCTCAAGTCCAATAACTTGCTCCTCAATGATGAGATGAGGGTCAAGGTGGCAGATTTTGGAACATCGTGTCTCGAAACACGGTGCCGGGAGACCAAAGGAAACATGGGAACTTACCGTTGGATGGCGCCGGAGATGATTAAGGAGAAACCGTATACCCGTAAGGTTGATGTGTATAGCTTTGGAATTGTGCTTTGGGAACTCACAACCGCNCTGCTTCCCTTTCAAGGAATGACCCCCGTCCAAGCTGCTTTTGCTGTTTCTGAGAAGAACGAGAGGCCTCCACTGCCGGCAAGTTGTCAGCCAGCACTAGCTCATCTGATAAAGCGTTGTTGGTCAGCAAACCCATCGAAGAGGCCAGATTTCAGTGACATTGTGTCAACACTGGAGAGGTACGATGAGTGNGTGAAGGAGGGTCTCCCTCTCACCCACCATTCCGGACTTGTCACCCGAAACGCCATCATTCAACGCTTCAGAGGCTGTGTCTCCATGACCTCCTCCATTCCTGTACATGCCTGAAATGAAATTATATTCACATTAATTTCCCCCCCTCCCCACCCTTCCCTTCCTTTAAGGGTGGGTATATTTTTGTAATTGTCTTCCATTTTACTAAACCATGTGGGAATTATACAGTGGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00209	4010	7714	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0004674 protein serine/threonine kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000209s00013446.1	PF07714.12	Pkinase_Tyr	80	332	2.30E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.351
SRR1783600	control	0.350
SRR1783602	moderate drought stress	0.787
SRR1811619	moderate drought stress	0.748

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.191
DRR006520	Root Summer glycyrrhizin high producing strain	1.286
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.328
DRR006524	Root Summer glycyrrhizin low producing strain	1.414
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.861
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.892

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.194
SRR2868004	Drought Stress(Tissue:root)	1.883
SRR2967015	Control (Tissue:root)	1.545

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.089
SRR9715740	Leave	0.489
SRR9715741	Leave	0.420
SRR9715739	Root	0.159
SRR9715742	Root	0.739
SRR9715743	Root	0.577

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.112
SRR8749028	MeJA induced 9h	0.054
SRR8749029	MeJA induced 9h	0.084
SRR8749030	Uninduced	0.204
SRR8749031	Uninduced	0.148
SRR8749032	Uninduced	0.234

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.393
SRR8400027	Control-Root	1.059