Gene detail information of Glyur000209s00013455.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G22360.11.00E-53SWIB complex BAF60b domain-containing protein
NRXP_007154015.11.74E-149hypothetical protein PHAVU_003G083900g [Phaseolus vulgaris]
COGYP_002496615.13.00E-17SWIB/MDM2 domain-containing protein [Methylobacterium nodulans ORS 2060]
trEMBLtr|V7C786|V7C786_PHAVU6.00E-150Uncharacterized protein {ECO:0000313|EMBL:ESW26009.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002094204744538+


Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000209s00013455.1PF08766.6DEK_C12652.80E-15
Glyur000209s00013455.1PF02201.13SWIB1732471.90E-25
Glyur000209s00013455.1PF02201.13SWIB2773131.20E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.007
SRR1783600control10.014
SRR1783602moderate drought stress15.442
SRR1811619moderate drought stress15.220

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.722
DRR006520Root Summer glycyrrhizin high producing strain9.103
DRR006521Root Winter glycyrrhizin high producing strain6.257
DRR006522Root Winter glycyrrhizin high producing strain6.468
DRR006523Root Summer glycyrrhizin low producing strain9.435
DRR006524Root Summer glycyrrhizin low producing strain8.933
DRR006525Leaf Summer glycyrrhizin high producing strain7.714
DRR006526Leaf Summer glycyrrhizin high producing strain7.781

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.278
SRR2868004Drought Stress(Tissue:root)24.471
SRR2967015Control (Tissue:root)29.601

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.297
SRR9715740Leave9.894
SRR9715741Leave8.152
SRR9715739Root8.069
SRR9715742Root10.371
SRR9715743Root8.833

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.667
SRR8749028MeJA induced 9h19.466
SRR8749029MeJA induced 9h16.789
SRR8749030Uninduced10.800
SRR8749031Uninduced7.802
SRR8749032Uninduced8.184

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.654
SRR8400027Control-Root25.420

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved