Gene detail information of Glyur000209s00013464.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G68750.10phosphoenolpyruvate carboxylase 4
NRXP_004496214.10PREDICTED: phosphoenolpyruvate carboxylase 4-like [Cicer arietinum]
COGYP_008045770.10phosphoenolpyruvate carboxylase [Spiribacter salinus M19-40]
Swissprottr|Q8GVE8|CAPP4_ARATH0Phosphoenolpyruvate carboxylase 4
trEMBLtr|I1LCU6|I1LCU6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G34970.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0020990963100295+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01595ppc EC:4.1.1.31 Carbon metabolism map01200
Pyruvate metabolismmap00620
Carbon fixation in photosynthetic organismsmap00710
Carbon fixation pathways in prokaryotesmap00720
Methane metabolismmap00680


Gene Ontology

biological_process

GO:0006099  tricarboxylic acid cycle

GO:0015977  carbon fixation


molecular_function

GO:0003824  catalytic activity

GO:0008964  phosphoenolpyruvate carboxylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000209s00013464.1PF00311.12PEPcase1453422.30E-57
Glyur000209s00013464.1PF00311.12PEPcase45210541.60E-224


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control55.899
SRR1783600control56.181
SRR1783602moderate drought stress81.543
SRR1811619moderate drought stress81.406

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain100.245
DRR006520Root Summer glycyrrhizin high producing strain98.676
DRR006521Root Winter glycyrrhizin high producing strain12.428
DRR006522Root Winter glycyrrhizin high producing strain11.939
DRR006523Root Summer glycyrrhizin low producing strain53.255
DRR006524Root Summer glycyrrhizin low producing strain53.654
DRR006525Leaf Summer glycyrrhizin high producing strain38.584
DRR006526Leaf Summer glycyrrhizin high producing strain38.135

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)76.481
SRR2868004Drought Stress(Tissue:root)82.255
SRR2967015Control (Tissue:root)87.382

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave29.454
SRR9715740Leave34.296
SRR9715741Leave27.231
SRR9715739Root49.976
SRR9715742Root106.509
SRR9715743Root95.489

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.420
SRR8749028MeJA induced 9h12.621
SRR8749029MeJA induced 9h10.108
SRR8749030Uninduced1.346
SRR8749031Uninduced0.256
SRR8749032Uninduced1.660

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root102.782
SRR8400027Control-Root121.262

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved