Gene detail information of Glyur000209s00013476.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02070.1 | 3.00E-62 | indeterminate(ID)-domain 5 |
| NR | XP_003555448.1 | 0 | PREDICTED: zinc finger protein JACKDAW-like [Glycine max] |
| Swissprot | tr|Q8GYC1|IDD4_ARATH | 2.00E-102 | Protein indeterminate-domain 4, chloroplastic {ECO:0000303|PubMed:16784536} (Precursor) |
| trEMBL | tr|I1NHJ1|I1NHJ1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G32480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00209 | 184759 | 188635 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.086 |
| SRR1783600 | control | 0.084 |
| SRR1783602 | moderate drought stress | 1.006 |
| SRR1811619 | moderate drought stress | 1.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.063 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.062 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 55.901 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 53.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.950 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.243 |
| SRR2967015 | Control (Tissue:root) | 4.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 25.944 |
| SRR9715740 | Leave | 28.691 |
| SRR9715741 | Leave | 23.461 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.948 |
| SRR9715743 | Root | 0.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.113 |
| SRR8400027 | Control-Root | 0.599 |