Gene detail information of Glyur000210s00014433.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G06780.1 | 2.00E-164 | galacturonosyltransferase 6 |
| NR | KEH23859.1 | 0 | galacturonosyltransferase [Medicago truncatula] |
| Swissprot | tr|Q9M9Y5|GAUT6_ARATH | 0 | Probable galacturonosyltransferase 6 |
| trEMBL | tr|A0A072U2E1|A0A072U2E1_MEDTR | 0 | Galacturonosyltransferase {ECO:0000313|EMBL:KEH23859.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00210 | 28394 | 36367 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13648 | GAUT | EC:2.4.1.43 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000210s00014433.1 | PF01501.15 | Glyco_transf_8 | 375 | 666 | 3.70E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.362 |
| SRR1783600 | control | 12.316 |
| SRR1783602 | moderate drought stress | 8.612 |
| SRR1811619 | moderate drought stress | 8.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.983 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.915 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.692 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.274 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.494 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.369 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 123.745 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 123.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.428 |
| SRR2868004 | Drought Stress(Tissue:root) | 24.885 |
| SRR2967015 | Control (Tissue:root) | 23.747 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 118.669 |
| SRR9715740 | Leave | 85.885 |
| SRR9715741 | Leave | 83.553 |
| SRR9715739 | Root | 3.679 |
| SRR9715742 | Root | 13.927 |
| SRR9715743 | Root | 13.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.869 |
| SRR8749028 | MeJA induced 9h | 19.174 |
| SRR8749029 | MeJA induced 9h | 14.427 |
| SRR8749030 | Uninduced | 16.083 |
| SRR8749031 | Uninduced | 9.257 |
| SRR8749032 | Uninduced | 13.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.730 |
| SRR8400027 | Control-Root | 22.969 |