Gene detail information of Glyur000211s00017633.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G76390.22.00E-49ARM repeat superfamily protein
NRAET02002.20spotted leaf protein, putative [Medicago truncatula]
COGYP_001957949.11.00E-09hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9SFX2|PUB43_ARATH5.00E-55U-box domain-containing protein 43
trEMBLtr|G7LAU3|G7LAU3_MEDTR0Spotted leaf protein, putative {ECO:0000313|EMBL:AET02002.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002114846354393+


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000211s00017633.1PF04564.10U-box3203862.40E-16
Glyur000211s00017633.1PF00514.18Arm5876269.20E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.520
SRR1783600control3.544
SRR1783602moderate drought stress3.902
SRR1811619moderate drought stress3.889

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.721
DRR006520Root Summer glycyrrhizin high producing strain4.896
DRR006521Root Winter glycyrrhizin high producing strain1.583
DRR006522Root Winter glycyrrhizin high producing strain1.558
DRR006523Root Summer glycyrrhizin low producing strain6.599
DRR006524Root Summer glycyrrhizin low producing strain6.766
DRR006525Leaf Summer glycyrrhizin high producing strain9.835
DRR006526Leaf Summer glycyrrhizin high producing strain9.639

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.130
SRR2868004Drought Stress(Tissue:root)15.203
SRR2967015Control (Tissue:root)14.951

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.361
SRR9715740Leave19.818
SRR9715741Leave46.052
SRR9715739Root0.624
SRR9715742Root6.249
SRR9715743Root5.504

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.759
SRR8749028MeJA induced 9h7.705
SRR8749029MeJA induced 9h3.068
SRR8749030Uninduced4.361
SRR8749031Uninduced6.133
SRR8749032Uninduced3.716

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.845
SRR8400027Control-Root8.069

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved