Gene detail information of Glyur000212s00017506.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02890.1 | 2.00E-46 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | XP_004511791.1 | 1.08E-133 | PREDICTED: uncharacterized protein LOC101505946 isoform X3 [Cicer arietinum] |
| trEMBL | tr|K7LN08|K7LN08_SOYBN | 7.00E-120 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G04671.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00212 | 17311 | 29019 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.965 |
| SRR1783600 | control | 2.007 |
| SRR1783602 | moderate drought stress | 2.756 |
| SRR1811619 | moderate drought stress | 2.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.117 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.081 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.108 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.180 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.227 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.968 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.105 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.552 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.835 |
| SRR2967015 | Control (Tissue:root) | 6.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.760 |
| SRR9715740 | Leave | 4.740 |
| SRR9715741 | Leave | 5.305 |
| SRR9715739 | Root | 0.218 |
| SRR9715742 | Root | 1.689 |
| SRR9715743 | Root | 1.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.944 |
| SRR8749028 | MeJA induced 9h | 7.059 |
| SRR8749029 | MeJA induced 9h | 4.218 |
| SRR8749030 | Uninduced | 8.122 |
| SRR8749031 | Uninduced | 4.185 |
| SRR8749032 | Uninduced | 2.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.548 |
| SRR8400027 | Control-Root | 5.478 |