Gene detail information of Glyur000212s00017507.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G37850.12.00E-39basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NRACN21641.12.08E-143putative basic helix-loop-helix protein BHLH17 [Lotus japonicus]
Swissprottr|Q9T072|BH025_ARATH5.00E-55Transcription factor bHLH25
trEMBLtr|C0JP22|C0JP22_LOTJA8.00E-144Putative basic helix-loop-helix protein BHLH17 {ECO:0000313|EMBL:ACN21641.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002124025362104+


Gene family

Gene familysubfamily
Transcription Factors FamilybHLH


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0046983  protein dimerization activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000212s00017507.1PF00010.21HLH2042501.70E-08
Glyur000212s00017507.1PF00010.21HLH5866324.80E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.023
SRR1783600control17.189
SRR1783602moderate drought stress16.002
SRR1811619moderate drought stress15.940

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.541
DRR006520Root Summer glycyrrhizin high producing strain15.184
DRR006521Root Winter glycyrrhizin high producing strain0.065
DRR006522Root Winter glycyrrhizin high producing strain0.127
DRR006523Root Summer glycyrrhizin low producing strain3.048
DRR006524Root Summer glycyrrhizin low producing strain3.068
DRR006525Leaf Summer glycyrrhizin high producing strain2.007
DRR006526Leaf Summer glycyrrhizin high producing strain2.118

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)32.127
SRR2868004Drought Stress(Tissue:root)20.867
SRR2967015Control (Tissue:root)22.218

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.229
SRR9715740Leave19.864
SRR9715741Leave4.398
SRR9715739Root15.879
SRR9715742Root21.646
SRR9715743Root21.213

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.579
SRR8749028MeJA induced 9h0.389
SRR8749029MeJA induced 9h0.440
SRR8749030Uninduced0.074
SRR8749031Uninduced0.104
SRR8749032Uninduced0.206

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.854
SRR8400027Control-Root20.757

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved