Gene detail information of Glyur000212s00017511.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G22780.12.00E-151peroxisomal NAD-malate dehydrogenase 1
NRXP_003611508.10Malate dehydrogenase, glyoxysomal [Medicago truncatula]
COGYP_002153084.11.00E-111malate dehydrogenase [Proteus mirabilis HI4320]
Swissprottr|P19446|MDHG_CITLA0Malate dehydrogenase, glyoxysomal (Precursor)
trEMBLtr|G7K140|G7K140_MEDTR0Malate dehydrogenase {ECO:0000256|RuleBase:RU003405}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002128605090235-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00026MDH2 EC:1.1.1.37 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Cysteine and methionine metabolismmap00270


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006108  malate metabolic process

GO:0019752  carboxylic acid metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0016491  oxidoreductase activity

GO:0016615  malate dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0030060  L-malate dehydrogenase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000212s00017511.1PF00056.18Ldh_1_N491911.90E-46
Glyur000212s00017511.1PF02866.13Ldh_1_C1933576.30E-49


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control54.635
SRR1783600control54.873
SRR1783602moderate drought stress33.107
SRR1811619moderate drought stress33.054

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain52.049
DRR006520Root Summer glycyrrhizin high producing strain50.712
DRR006521Root Winter glycyrrhizin high producing strain56.702
DRR006522Root Winter glycyrrhizin high producing strain54.940
DRR006523Root Summer glycyrrhizin low producing strain50.998
DRR006524Root Summer glycyrrhizin low producing strain50.157
DRR006525Leaf Summer glycyrrhizin high producing strain25.982
DRR006526Leaf Summer glycyrrhizin high producing strain25.431

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)53.641
SRR2868004Drought Stress(Tissue:root)50.259
SRR2967015Control (Tissue:root)47.884

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave42.808
SRR9715740Leave43.752
SRR9715741Leave43.120
SRR9715739Root37.179
SRR9715742Root41.477
SRR9715743Root43.284

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h122.670
SRR8749028MeJA induced 9h172.033
SRR8749029MeJA induced 9h184.474
SRR8749030Uninduced252.642
SRR8749031Uninduced219.258
SRR8749032Uninduced232.658

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root83.662
SRR8400027Control-Root79.883

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved