Gene detail information of Glyur000212s00017523.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G65730.13.00E-126xyloglucan endotransglucosylase/hydrolase 6
NRXP_003539234.10PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 6-like [Glycine max]
COGYP_004642276.12.00E-12protein GluB [Paenibacillus mucilaginosus KNP414]
Swissprottr|Q8LF99|XTH6_ARATH1.00E-158Probable xyloglucan endotransglucosylase/hydrolase protein 6 (Precursor)
trEMBLtr|I1LH32|I1LH32_SOYBN0Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00212133000134239+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006073  cellular glucan metabolic process


cellular_component

GO:0005618  cell wall

GO:0048046  apoplast


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762  xyloglucan:xyloglucosyl transferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000212s00017523.1PF00722.16Glyco_hydro_16342072.40E-53
Glyur000212s00017523.1PF06955.7XET_C2302804.50E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control102.658
SRR1783600control100.664
SRR1783602moderate drought stress120.192
SRR1811619moderate drought stress118.311

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.949
DRR006520Root Summer glycyrrhizin high producing strain5.123
DRR006521Root Winter glycyrrhizin high producing strain0.129
DRR006522Root Winter glycyrrhizin high producing strain0.126
DRR006523Root Summer glycyrrhizin low producing strain10.615
DRR006524Root Summer glycyrrhizin low producing strain9.713
DRR006525Leaf Summer glycyrrhizin high producing strain28.591
DRR006526Leaf Summer glycyrrhizin high producing strain29.328

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.203
SRR2868004Drought Stress(Tissue:root)2.134
SRR2967015Control (Tissue:root)3.832

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.373
SRR9715740Leave2.045
SRR9715741Leave3.511
SRR9715739Root289.748
SRR9715742Root80.956
SRR9715743Root119.903

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.917
SRR8749028MeJA induced 9h3.093
SRR8749029MeJA induced 9h2.923
SRR8749030Uninduced0.849
SRR8749031Uninduced0.193
SRR8749032Uninduced0.434

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.479
SRR8400027Control-Root44.874

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved