Gene detail

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Gene detail information of Glyur000212s00017535.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37770.1	0	1-amino-cyclopropane-1-carboxylate synthase 8
NR	XP_003611535.1	0	1-aminocyclopropane-1-carboxylate synthase [Medicago truncatula]
COG	YP_004582080.1	2.00E-61	1-aminocyclopropane-1-carboxylate deaminase [Frankia symbiont of Datisca glomerata]
Swissprot	tr\|Q00257\|1A12_CUCMA	0	1-aminocyclopropane-1-carboxylate synthase CMA101
trEMBL	tr\|G7K167\|G7K167_MEDTR	0	1-aminocyclopropane-1-carboxylate synthase {ECO:0000313\|EMBL:AES94493.1}

Sequence

Transcript Sequence

>Glyur000212s00017535.1
ATGAAGCTGCTGTCTAGAAAAGCCACATGCAATACTCACGGCCAAGATTCTTCATACTTCCTAGGATGGCAGGAGTATGAGAAAAACCCTTACGATGAGGTTCAGAATCCCAAAGGAATTATTCAGATGGGTCTTGCAGAGAATCAGCTGTCTTTCGATCTCCTAGAGTCTTGGCTCGCTTTGAACCCAGACGTAGCTGGATTCAAACGCGATGGCAAATCCATATTCCGAGAGCTCGCTCTCTTCCAAGACTACCATGGCCTACCTGCTTTCAAGAAGGCATTGGTAGATTTCATGGCAGAAATTAGAGGAAACAAGGTCACTTTTAACCCCAACCACATTGTTCTAACAGCTGGTGCCACTTCTGCAAACGAGACCCTCATGTTTTGCCTCGCCGAACAAGGAGAAGCCTTCCTCCTACCCACTCCTTATTACCCAGGATTTGACAGAGACCTTAAGTGGCGAACTGGAGTGGAGATCGTTCCTATACAATGCACAAGCTCCAACAATTTCCAAATCACTGAATCTGCTCTTCNACAAGCTCACGAAGAAGCAAAGAAGAAGAACCTCAGAGTCAAAGGCGTCTTGGTGACAAACCCATCCAACCCACTGGGCACTACAATGTCTCGGAGTGAACTGAACCTGCTCATCGACTTCATCAAAGACAAAAAAGACANGCATTTGATAAGCGATGAGATTTANTCCGGGACAGTTTTTAGCTCTCCAGGCTTTGTTAGTGTCATGGAAATCCTAAAGGAGAGAAACGACCTCGAGGATTCCGTTGACGCTCAAGTTTGGAACAGAGTTCACGTCGTCTATAGTCTCTCCAAAGACTTGGGTTTACCGGGTTTCCGTGTGGGCGCTATCTATTCTGAAAACGACACCGTCGTGGCGGCTGCGACAAAGATGTCAAGCTTTGGCTTGGTATCCTCACAAACCCAGTACCTCCTCTCAGCCATGCTCGGTGACAAGAAATTCACCAAAAACTACATCTCTGAGAATCAAAAGAGACTGAAACGACGACAGAGAATGCTTGTGTCGGGCCTACAGAAAGCGGGTATTAGCTGCCTAAAGACCAATAACGCTGGCTTGTTTTGCTGGGTCGACATGAGGCACCTTCTCTGTTCCAATACATTTGAAGCAGAGATGGAGTTGTGGAAGAAGATTTTGTACGATGTTCGATTAAACATATCACCTGGGTCGTCGTGCCATTGCACTGAACCTGGCTGGTTTCGGGTATGTTTTGCTAACATGTCTGAAGACACTTTAAACCTAGCCATGAAAAGATTAAAGGCCTTTGTTGTAAACTCCAATGGTNCTGACGGCGGGTGCAGCAAGAGTAGAGTTCGGTCTTCTGGAATTTCGACGAGGAAGTCACTGTACTCCAATTGGGTTTTCCGGCTNTCGTCTCGTGATCATCGTGAACAAGAAGAAAGATAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00212	217236	219180	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01762	ACS	EC:4.4.1.14	Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function GO:0003824 catalytic activity GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000212s00017535.1	PF00155.16	Aminotran_1_2	41	430	8.70E-94

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.918
SRR1783600	control	0.901
SRR1783602	moderate drought stress	0.727
SRR1811619	moderate drought stress	0.630

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.034
DRR006521	Root Winter glycyrrhizin high producing strain	1.386
DRR006522	Root Winter glycyrrhizin high producing strain	1.426
DRR006523	Root Summer glycyrrhizin low producing strain	0.186
DRR006524	Root Summer glycyrrhizin low producing strain	0.219
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.065
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.064

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.369
SRR2868004	Drought Stress(Tissue:root)	0.069
SRR2967015	Control (Tissue:root)	0.623

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.905
SRR9715740	Leave	0.330
SRR9715741	Leave	0.403
SRR9715739	Root	2.134
SRR9715742	Root	0.969
SRR9715743	Root	0.753

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.580
SRR8749028	MeJA induced 9h	22.906
SRR8749029	MeJA induced 9h	9.327
SRR8749030	Uninduced	4.863
SRR8749031	Uninduced	1.296
SRR8749032	Uninduced	8.254

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.149
SRR8400027	Control-Root	0.661