Gene detail

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Gene detail information of Glyur000212s00017537.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37750.1	2.00E-95	Integrase-type DNA-binding superfamily protein
NR	XP_007155799.1	0	hypothetical protein PHAVU_003G232600g [Phaseolus vulgaris]
Swissprot	tr\|Q38914\|ANT_ARATH	3.00E-145	AP2-like ethylene-responsive transcription factor ANT
trEMBL	tr\|V7CEK3\|V7CEK3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW27793.1}

Sequence

Transcript Sequence

>Glyur000212s00017537.2
CTTCAATTTCTGTTAATTAGTAAGTAGTGAGGTTAAGTAGTGATCATACCGAGTCTTCAAGATGAAGCCCATCGAAAATGGTGATGCCGTTAACGTAAACAATCAAAATAACCTGTTGGGTTTCTCCCTCTCTCCCCAAATGAATACAGGTGTTCCCTCACACCCTCATCACACACTACCTTCCTCTGCTGCTGCAGCTGAAGCAGTTCCACTTCCACCAAGCTTTTACCACCCTACACCTCTTCATAACTATGGCTTTTACTATGGACTTGAAGGTGAACATGTTGGGTTGTATTCAGCCTTGCCTATCATGCCCATCAAATCTGATGGCTCTACATATGGAATCGAAGCTTTGACTAGATCACACACACAAGCAATGGCAACTAGTTCAACACTAAAAATGGAAAATTTCTTAGGTGGCCAAACGATGGGGATCCCTCCTCGACATGAATGCATTACCAAAGAAGCAATGCATCTGAGCCTAGATAGTATGTTTTACAACCAAACTTCATGTGAACAAGAGAATATCAACCAGCAACAATTCTCATATTACTCCGCCTTAAGAAACCATGATGTGATGTTACAAGGGTCTAAGCAAAATCAGCTAAGAGATAGTGTCCAGCTCCCAAACATAGCTGAGGATGAAGTTTCTGGTTTCAAGAGCTGGGTCTCAAGGGGCTTTCATGCTAGCCATGCACAGGACTCAAAGATGTTTGTTCCTTTGGAGAATAATAATGGAGGTGAATCCGGGTACATTGGATCAATGACATGCGGGGATTTAAAGTCATTGAGCTTGTCCATGAGTCCTAGTTCACAATCAAGCTGTGTTACAAGTTCACAATGGACATCACCTGCTCTCATTGATACAAAGAAAAGGGGGCCTGAAATGGTGGACTTGGAACAGAATCAGAAGCAAACCGTTCTTAGGAAATCCATAGATACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGATGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTTTAAGAAAGAGGGCCAAGGAAGGAAAGGAAAGCAAGGGGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATATGGCCGCACTCAAGTACTGGGGACCCTCCACTCATATAAATTTCCCATTGGAAAATTATCAAAAGGAACTTGAGGAAATGAAGAAAATGACCAGACAAGAATATGTTGCTCATTTAAGAAGGAATAGCAGCGGATTCTCAAGAGGGGCTTCAATGTATAGAGGAGTGACAAGACACCATCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAATAAAGATCTATATCTTGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAATCCTACGACATTGCTGCTATAAAATTCAGAGGAGTTAATGCTGTTACTAACTTTGATATAACAAGATATGATGTGGAAAAAATTATGGCAAGCAGTAACCTTCTGAGCAGTGAACTAGCAAGGAGGAACAGAGAGATATTGGATGATGGAAGTGGCATCAATGCTGTTATTGACCATAAACCTCAAGAAGCAATTTTAATGCAGAAGAGCTGCAAAATCCAATCAGAGTGGAAGGATATGGTTCTCTATCAATCCTCCCAATGCCAACAACAACTTGACCAGAATCCACCAAGCATTGAGAGTTGCAACTTCTCAATGGCTTTAGATAACATAATTCATCAAGAAGTAGAGGATCATCAATCCAGTGACATGGGAAGACACGTGTCAAATCCTTCTTCTCTGGTGACAAGCTTGAGCAGCTCAAGAGAAGAAAGCCCAGATCACAAGACAAACTTGCCAATGCTCTTTGCAATGCCTTCAACAGAGCCTAATAAATTATTGGCTACCATTCCAACTAGTGACGTGGATTCTTGGGAGCCTTCTGCTCATCTCATCAGGCCTGTGGTTTCTTTGCCTCAGGCTCAGATGCCACTCTTTGCTGCTTGGACCGATGGATAATCCTTTTTTGTTTCTCCACCAAAATGGCAAATGCTTGATTTGCATGCATGTTCACACTATTCATATTTCATAAAATCAAAAGTTTTTATAATTATACCGTTTAGTCAAAGTTCGTTAAATCATGGATAGAAACGGCCAAGAAATTAAGTTCCGATCGAAGGGGTTTATGATTGAGTTGAGAGTGTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00212	242665	246303	-

Gene family

Gene family	subfamily
Transcription Factors Family	AP2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0003677 DNA binding GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000212s00017537.2	PF00847.15	AP2	300	356	1.40E-09
Glyur000212s00017537.2	PF00847.15	AP2	401	450	5.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.649
SRR1783600	control	2.584
SRR1783602	moderate drought stress	2.441
SRR1811619	moderate drought stress	2.457

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.452
DRR006520	Root Summer glycyrrhizin high producing strain	4.301
DRR006521	Root Winter glycyrrhizin high producing strain	0.296
DRR006522	Root Winter glycyrrhizin high producing strain	0.290
DRR006523	Root Summer glycyrrhizin low producing strain	4.524
DRR006524	Root Summer glycyrrhizin low producing strain	4.457
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.123
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.123

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	6.630
SRR2868004	Drought Stress(Tissue:root)	9.148
SRR2967015	Control (Tissue:root)	16.991

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.141
SRR9715740	Leave	0.000
SRR9715741	Leave	0.165
SRR9715739	Root	0.044
SRR9715742	Root	1.013
SRR9715743	Root	0.578

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	7.746
SRR8400027	Control-Root	11.348