Gene detail information of Glyur000213s00016094.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G19310.16.00E-65RING/U-box superfamily protein
NRAFK34238.11.01E-132unknown [Lotus japonicus]
Swissprottr|Q6R567|RMA1_CAPAN1.00E-29E3 ubiquitin-protein ligase RMA1H1
trEMBLtr|I3S3J9|I3S3J9_LOTJA4.00E-133Uncharacterized protein {ECO:0000313|EMBL:AFK34841.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00213113352114997+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10666RNF5 EC:2.3.2.27 Protein processing in endoplasmic reticulum map04141


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000213s00016094.1PF13923.1zf-C3HC4_232729.90E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control84.764
SRR1783600control85.554
SRR1783602moderate drought stress91.466
SRR1811619moderate drought stress90.798

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain76.161
DRR006520Root Summer glycyrrhizin high producing strain75.555
DRR006521Root Winter glycyrrhizin high producing strain69.959
DRR006522Root Winter glycyrrhizin high producing strain67.880
DRR006523Root Summer glycyrrhizin low producing strain92.936
DRR006524Root Summer glycyrrhizin low producing strain93.928
DRR006525Leaf Summer glycyrrhizin high producing strain37.619
DRR006526Leaf Summer glycyrrhizin high producing strain37.629

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)94.013
SRR2868004Drought Stress(Tissue:root)107.999
SRR2967015Control (Tissue:root)107.668

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave72.366
SRR9715740Leave67.668
SRR9715741Leave95.892
SRR9715739Root114.284
SRR9715742Root66.516
SRR9715743Root67.624

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h126.983
SRR8749028MeJA induced 9h88.026
SRR8749029MeJA induced 9h132.735
SRR8749030Uninduced139.717
SRR8749031Uninduced162.648
SRR8749032Uninduced206.815

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root86.259
SRR8400027Control-Root75.035

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved