Gene detail information of Glyur000213s00016095.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19300.1 | 5.00E-123 | Nucleotide-diphospho-sugar transferases superfamily protein |
| NR | KEH40084.1 | 0 | CAZy family GT8 glycosyltransferase [Medicago truncatula] |
| COG | YP_007062961.1 | 3.00E-19 | LPS:glycosyltransferase [Synechococcus sp. PCC 6312] |
| Swissprot | tr|Q9LN68|GATL1_ARATH | 9.00E-154 | Probable galacturonosyltransferase-like 1 |
| trEMBL | tr|A0A072VDI5|A0A072VDI5_MEDTR | 0 | CAZy family GT8 glycosyltransferase {ECO:0000313|EMBL:KEH40084.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00213 | 125442 | 127389 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000213s00016095.1 | PF01501.15 | Glyco_transf_8 | 99 | 353 | 1.90E-55 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 50.796 |
| SRR1783600 | control | 50.343 |
| SRR1783602 | moderate drought stress | 36.647 |
| SRR1811619 | moderate drought stress | 36.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 56.374 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 56.912 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.179 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.248 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 75.011 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 74.411 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.323 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.424 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.569 |
| SRR2967015 | Control (Tissue:root) | 30.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 25.832 |
| SRR9715740 | Leave | 15.722 |
| SRR9715741 | Leave | 17.347 |
| SRR9715739 | Root | 36.246 |
| SRR9715742 | Root | 90.307 |
| SRR9715743 | Root | 73.701 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 47.254 |
| SRR8749028 | MeJA induced 9h | 96.530 |
| SRR8749029 | MeJA induced 9h | 50.059 |
| SRR8749030 | Uninduced | 89.338 |
| SRR8749031 | Uninduced | 43.969 |
| SRR8749032 | Uninduced | 29.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.323 |
| SRR8400027 | Control-Root | 38.353 |