Gene detail information of Glyur000213s00016096.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19270.1 | 4.00E-180 | DA1 |
| NR | KEH40082.1 | 0 | zinc ion-binding protein [Medicago truncatula] |
| Swissprot | tr|P0C7Q8|DA1_ARATH | 0 | Protein DA1 |
| trEMBL | tr|A0A072VE38|A0A072VE38_MEDTR | 0 | Zinc ion-binding protein {ECO:0000313|EMBL:KEH40082.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00213 | 137783 | 145392 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LIM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000213s00016096.1 | PF00412.17 | LIM | 122 | 176 | 3.60E-08 |
| Glyur000213s00016096.1 | PF12315.3 | DUF3633 | 271 | 478 | 4.10E-94 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.950 |
| SRR1783600 | control | 4.913 |
| SRR1783602 | moderate drought stress | 5.380 |
| SRR1811619 | moderate drought stress | 5.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.408 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.363 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.822 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.819 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.446 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.333 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.059 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.697 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.111 |
| SRR2967015 | Control (Tissue:root) | 19.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.066 |
| SRR9715740 | Leave | 10.379 |
| SRR9715741 | Leave | 17.019 |
| SRR9715739 | Root | 5.522 |
| SRR9715742 | Root | 10.395 |
| SRR9715743 | Root | 9.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 53.433 |
| SRR8749028 | MeJA induced 9h | 48.621 |
| SRR8749029 | MeJA induced 9h | 56.052 |
| SRR8749030 | Uninduced | 86.926 |
| SRR8749031 | Uninduced | 39.180 |
| SRR8749032 | Uninduced | 39.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.608 |
| SRR8400027 | Control-Root | 12.552 |