Gene detail information of Glyur000213s00016107.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G42650.1 | 0 | allene oxide synthase |
NR | XP_004499109.1 | 0 | PREDICTED: allene oxide synthase, chloroplastic-like [Cicer arietinum] |
COG | YP_002501570.1 | 1.00E-22 | heme peroxidase [Methylobacterium nodulans ORS 2060] |
Swissprot | tr|P48417|CP74_LINUS | 0 | Allene oxide synthase, chloroplastic (Precursor) |
trEMBL | tr|Q7X9B4|Q7X9B4_MEDTR | 0 | Cytochrome P450 family fatty acid hydroperoxide lyase {ECO:0000313|EMBL:KEH40077.1} (Precursor) |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00213 | 219202 | 220809 | + |
Gene family
Gene family | subfamily |
---|---|
Cytochrome P450 Family | CYP74A |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K01723 | AOS | EC:4.2.1.92 | alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000213s00016107.1 | PF00067.17 | p450 | 364 | 510 | 1.80E-13 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 59.273 |
SRR1783600 | control | 58.030 |
SRR1783602 | moderate drought stress | 68.742 |
SRR1811619 | moderate drought stress | 63.972 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 154.297 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 154.497 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 10.452 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 10.787 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 78.920 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 79.562 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 42.278 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.692 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 99.942 |
SRR2868004 | Drought Stress(Tissue:root) | 179.216 |
SRR2967015 | Control (Tissue:root) | 298.987 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 274.240 |
SRR9715740 | Leave | 174.374 |
SRR9715741 | Leave | 297.289 |
SRR9715739 | Root | 493.868 |
SRR9715742 | Root | 718.474 |
SRR9715743 | Root | 653.172 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 113.571 |
SRR8749028 | MeJA induced 9h | 57.498 |
SRR8749029 | MeJA induced 9h | 54.677 |
SRR8749030 | Uninduced | 121.948 |
SRR8749031 | Uninduced | 23.372 |
SRR8749032 | Uninduced | 44.387 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 71.444 |
SRR8400027 | Control-Root | 123.342 |