Gene detail information of Glyur000214s00016022.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G23940.10dehydratase family
NRXP_004486142.10PREDICTED: dihydroxy-acid dehydratase-like [Cicer arietinum]
COGYP_004271115.10dihydroxyacid dehydratase [Planctomyces brasiliensis DSM 5305]
Swissprottr|Q9LIR4|ILVD_ARATH0Dihydroxy-acid dehydratase, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00012} (Precursor)
trEMBLtr|I1M137|I1M137_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G27810.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00214142120148926-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01687ilvD EC:4.2.1.9 2-Oxocarboxylic acid metabolism map01210
Biosynthesis of amino acidsmap01230
Valine, leucine and isoleucine biosynthesismap00290
Pantothenate and CoA biosynthesismap00770


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009082  branched-chain amino acid biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0004160  dihydroxy-acid dehydratase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000214s00016022.1PF00920.16ILVD_EDD795371.10E-183
Glyur000214s00016022.1PF00920.16ILVD_EDD5576212.30E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control32.337
SRR1783600control32.554
SRR1783602moderate drought stress44.369
SRR1811619moderate drought stress43.915

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain38.311
DRR006520Root Summer glycyrrhizin high producing strain38.153
DRR006521Root Winter glycyrrhizin high producing strain15.064
DRR006522Root Winter glycyrrhizin high producing strain14.797
DRR006523Root Summer glycyrrhizin low producing strain36.974
DRR006524Root Summer glycyrrhizin low producing strain36.810
DRR006525Leaf Summer glycyrrhizin high producing strain8.357
DRR006526Leaf Summer glycyrrhizin high producing strain8.316

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)59.449
SRR2868004Drought Stress(Tissue:root)34.383
SRR2967015Control (Tissue:root)40.228

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.640
SRR9715740Leave6.247
SRR9715741Leave6.587
SRR9715739Root36.251
SRR9715742Root36.440
SRR9715743Root37.940

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h53.999
SRR8749028MeJA induced 9h37.359
SRR8749029MeJA induced 9h36.410
SRR8749030Uninduced3.897
SRR8749031Uninduced1.989
SRR8749032Uninduced6.919

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root68.992
SRR8400027Control-Root60.811

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved