Gene detail information of Glyur000214s00016027.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G54830.31.00E-42nuclear factor Y, subunit C3
NRAFK49679.19.49E-58nuclear transcription factor Y subunit C10 [Medicago truncatula]
Swissprottr|Q9ZVL3|NFYC3_ARATH3.00E-52Nuclear transcription factor Y subunit C-3
trEMBLtr|I3TAY7|I3TAY7_MEDTR4.00E-58Nuclear transcription factor Y subunit C10 {ECO:0000313|EMBL:AFK49679.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00214167084167920+


Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005622  intracellular

GO:0016602  CCAAT-binding factor complex


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding

GO:0046982  protein heterodimerization activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000214s00016027.1PF00808.18CBFD_NFYB_HMF971592.10E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.370
SRR1783600control3.301
SRR1783602moderate drought stress4.889
SRR1811619moderate drought stress5.262

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.419
DRR006520Root Summer glycyrrhizin high producing strain2.089
DRR006521Root Winter glycyrrhizin high producing strain0.400
DRR006522Root Winter glycyrrhizin high producing strain0.260
DRR006523Root Summer glycyrrhizin low producing strain1.452
DRR006524Root Summer glycyrrhizin low producing strain1.401
DRR006525Leaf Summer glycyrrhizin high producing strain3.242
DRR006526Leaf Summer glycyrrhizin high producing strain2.843

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.792
SRR2868004Drought Stress(Tissue:root)0.679
SRR2967015Control (Tissue:root)0.879

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.002
SRR9715740Leave0.644
SRR9715741Leave1.016
SRR9715739Root0.595
SRR9715742Root0.238
SRR9715743Root0.513

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.959
SRR8749028MeJA induced 9h0.919
SRR8749029MeJA induced 9h1.009
SRR8749030Uninduced0.756
SRR8749031Uninduced0.807
SRR8749032Uninduced3.237

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.663
SRR8400027Control-Root0.567

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved