Gene detail information of Glyur000214s00016031.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06060.17.00E-126NAD(P)-binding Rossmann-fold superfamily protein
NRXP_003546136.10PREDICTED: 3-ketodihydrosphingosine reductase-like [Glycine max]
COGYP_001515088.18.00E-52short chain dehydrogenase/reductase family oxidoreductase [Acaryochloris marina MBIC11017]
Swissprottr|Q0WRJ2|TC10A_ARATH5.00E-1583-dehydrosphinganine reductase TSC10A
trEMBLtr|K7MAQ6|K7MAQ6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G11231.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00214181360184592+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04708E1.1.1.102 EC:1.1.1.102 Sphingolipid metabolism map00600


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000214s00016031.1PF00106.20adh_short402043.50E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.010
SRR1783600control14.061
SRR1783602moderate drought stress17.038
SRR1811619moderate drought stress16.719

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.910
DRR006520Root Summer glycyrrhizin high producing strain15.689
DRR006521Root Winter glycyrrhizin high producing strain24.575
DRR006522Root Winter glycyrrhizin high producing strain23.951
DRR006523Root Summer glycyrrhizin low producing strain17.747
DRR006524Root Summer glycyrrhizin low producing strain17.705
DRR006525Leaf Summer glycyrrhizin high producing strain6.844
DRR006526Leaf Summer glycyrrhizin high producing strain6.655

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.157
SRR2868004Drought Stress(Tissue:root)14.780
SRR2967015Control (Tissue:root)14.505

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.458
SRR9715740Leave8.766
SRR9715741Leave8.838
SRR9715739Root16.225
SRR9715742Root18.264
SRR9715743Root16.871

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.611
SRR8749028MeJA induced 9h13.548
SRR8749029MeJA induced 9h13.866
SRR8749030Uninduced5.615
SRR8749031Uninduced2.269
SRR8749032Uninduced5.334

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.255
SRR8400027Control-Root13.715

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved