Gene detail information of Glyur000214s00016034.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14220.1 | 3.00E-32 | RING-H2 group F1A |
| NR | XP_004486133.1 | 2.83E-178 | PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Cicer arietinum] |
| Swissprot | tr|Q9ZT42|RHF2A_ARATH | 7.00E-54 | E3 ubiquitin-protein ligase RHF2A |
| trEMBL | tr|A0A072V4R5|A0A072V4R5_MEDTR | 6.00E-176 | E3 ubiquitin-protein ligase RHF2A, putative {ECO:0000313|EMBL:KEH36802.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00214 | 193976 | 197352 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000214s00016034.1 | PF13639.1 | zf-RING_2 | 39 | 81 | 1.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 81.546 |
| SRR1783600 | control | 82.178 |
| SRR1783602 | moderate drought stress | 53.595 |
| SRR1811619 | moderate drought stress | 53.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 41.611 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 40.825 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 41.966 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 40.978 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.843 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.854 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.539 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 32.175 |
| SRR2868004 | Drought Stress(Tissue:root) | 28.942 |
| SRR2967015 | Control (Tissue:root) | 27.667 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 24.215 |
| SRR9715740 | Leave | 23.668 |
| SRR9715741 | Leave | 34.826 |
| SRR9715739 | Root | 28.177 |
| SRR9715742 | Root | 24.187 |
| SRR9715743 | Root | 24.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.480 |
| SRR8749028 | MeJA induced 9h | 28.952 |
| SRR8749029 | MeJA induced 9h | 21.631 |
| SRR8749030 | Uninduced | 9.607 |
| SRR8749031 | Uninduced | 5.917 |
| SRR8749032 | Uninduced | 14.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 54.691 |
| SRR8400027 | Control-Root | 40.121 |