Gene detail

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Gene detail information of Glyur000214s00016036.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G61810.1	5.00E-145	beta-glucosidase 45
NR	XP_004486131.1	0	PREDICTED: beta-glucosidase 47-like [Cicer arietinum]
COG	YP_004449345.1	8.00E-94	beta-galactosidase [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|O80689\|BGL45_ARATH	3.00E-172	Beta-glucosidase 45 (Precursor)
trEMBL	tr\|A0A072V574\|A0A072V574_MEDTR	0	Glycoside hydrolase family 1 protein {ECO:0000313\|EMBL:KEH36806.1}

Sequence

Transcript Sequence

>Glyur000214s00016036.1
CCAAATAGCTTGAAATTAGGCCAATGATTTCTGGTTGGTGTGTCAATTTCACTTGAATCCTGCCAAAGTTCACTCAATGCCTACATGAGCAGCGGCTCAAGCATATTGATGCTTGGCTATATTCGGGTTCTTTGCCTTGCCGCTAATAACCACGCACCTAGCCACTACACTACACTTAGACACAAATTAACACCAACAACATGGAGCTTCCAAAAAACATGGAGCTTCCACTCCCACTGCATCATGCCCTCTTTGCAGTACTTTTCTTTTCCTTCTCAATTTTTATGGGATCGAGTGCTTTTGTATCCGTGGAAGAGATTAATTCGAGTACTCCATCTCCATTTCCACTCAACTTCCTTTTTGGAACTGCATCTTCTTCCTATCAGTTTGAAGGAGCTTACTTGAGTGATGGCAAGGGACTAAATAACTGGGANGAAGACGTGGACCTAATGGAGTACATTGGAGTCAACAGCTATCAAGGTAGATTTGGCAAGTTGAACAGAGCAGGCATCGATTATTACAACCGGCTAATTGATACACTTATCAATAGAGGAATAGAACCATTTGTCACGATAACACACTTTGACATTCCTCAGGAACTTGAGGACAGATATGAAGGATGGCTAAGTCCTGAAATTCAGTATTATGCAGATATATGCTTCAATTACTTTGGAGACAGAGTCAAATACTGGGTCACCTTTAATGAACCCAATGTTGCAATTATTCGTGGTTATAGAACAGGGCTGTATCCACCAGCCCGTTGCTCTGGCTCATTTGGAAACTGCAGCTATGGGGATTCAGAGAGGGAGCCTTTCATTGCAGCCTCTAACCTTATCTTATCCCATGCTGCTGCTGTTGATGTGTACAGAACCAAATATCAAAAAAATCAAGGAGGAAAAATTGGGATTGTTATGAATGCTGTATGGCATGAACCCTTCAGCAACTCCTCAGAAGACAAGTTTTTGGACCCAATAATACTGGGAAAATATCCAGCAGAAATGAATGAAATATTAGGACCTGACCTCCTAGCATTTTCAACAATTGATATGGAAAGACTCAAGAGTGGATTAGATTTCATTGGAATAAATCACTATACCAGTGTGTTTGTTAAAGACTGCATCTTCTCTGCATGTGAACCAGGACGAGGGTCTTCAAAGACAGAGGGTTTTGCTCTAAAGTCTCCACAAATTAATGGCATCAGCATTGGAGAACCGACTGCACTTGACTGGTTGTATGTTCACCCACAAGGAATGGAGAAGACAGTGACTTACATAAAGGACAGGTACAACAATATACCAATGTTCATTACAGAAAATGGACTTGGGACGAGTGAGAATTCCTACCCCACCACTAATGAGATATTCAATGATGTCAAAAGAGTGGAGTACTTGAGTTGTTACTTGGATTCTCTAGTAACAGCTATAAGGAAAGGAGCAGATGTGAGAGGGTACTTNGTGTGGTCCCTTCTTGACAACTTTGAGTGGAATTATGGTTACACTNTAAGGTTTGGACTTCATCATGTGGACTACGACACTCTTAATAGAACCCGAAGACTTTCAGCATTTTGGTACAAAAACTTCATTGCAGAACATAAGGCTCGCGCTGGCATAAGGCGCCCAGGACAATACTCAAGAGAGATCAACAATGAAAAGATATCTAGTGCAAATGTGCAATGCAAATTAAGCACAACGCAAATGGCATTCTATACATTGGTGAAAGCATTGTTTCTGGAGATACCCTTGATTGTTTTATTCATGTCATGNCCCCTGAGAGCTCTCTCAAAGAGGTTGGACCCATCTCCCAACTTCCTCTTTGGAACTTCTTCTTCTTCTTACCAGTATGAAGGTGCTTACTTGAGTGATGGAAAAGGACTAGGCATCTGGGATGTCTTCACTCACGAAAGTACACCAGAAGGTACATTTGGAGAAGACAATTCGGCTGGCATCAGCTACTACAACCGGTTAATAGATGCTTTGCTTCTCAAAGGTGGTAGAATTGGCATTGTCATGCATGCTGACTGGTATGAACCCATCAGCAATTCCTTGGCAGACAAGTTCTTGGAACCAATCATATTCGGTAAATACCCTCCAGTTATGCAGAAGATTCTAGGAAATATCTTACTCCAATTTTCCACCAACGACAAAGAGAAACTGAAGAGAGGATTGGATTTCATTGGCATCAATCACTATCAGAGTTACTATGTCAAGGATTGCATCTACTCCATGTGTGAATCAGGACCTGGGATAACCAGAACAGAGGGTTTATACCAACAAAGTGTAGAAAANGATGGATTTCCAATTGGGCAACCTACTAAAATTGACTGGCAATATGTTTATCCACAAGGCATGGAGAAAATTGTCACCTATGTAAAAGACAGATACAATAATACTCCAATGTTCATAACTGAAAACGGGTATGCCGAGTTGGACAACCCAAATTACACCGAAGAGCAATACCTTAATGATTTCAACAGAAAAAATTACATGGCGGCTCATTTAGATGCCCTAATGGAAGCAATAAGGAAAGGAGCCGATGTTAGAGGGTATTTTGCCTGGTCCTTGCTCGACAACTTTGAGTGGTTAAAAGGATATACAGTAAGATTTGGACTCCACCATGTTGATTATGCAACACTGAAGAGAACTCCAAGACTATCAGCAAGTTGGTACAAGGAATTCATAGCGAAGCATAAAACAGAAGCCTTCAGCCAGGAATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00214	213507	223749	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05350	bglB	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000214s00016036.1	PF00232.13	Glyco_hydro_1	46	78	7.20E-08
Glyur000214s00016036.1	PF00232.13	Glyco_hydro_1	80	465	2.00E-99
Glyur000214s00016036.1	PF00232.13	Glyco_hydro_1	535	567	1.70E-09
Glyur000214s00016036.1	PF00232.13	Glyco_hydro_1	597	830	1.40E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.131
SRR1783600	control	17.204
SRR1783602	moderate drought stress	28.300
SRR1811619	moderate drought stress	28.567

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.054
DRR006520	Root Summer glycyrrhizin high producing strain	14.914
DRR006521	Root Winter glycyrrhizin high producing strain	0.040
DRR006522	Root Winter glycyrrhizin high producing strain	0.040
DRR006523	Root Summer glycyrrhizin low producing strain	2.442
DRR006524	Root Summer glycyrrhizin low producing strain	2.338
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.645
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.553

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	10.050
SRR2868004	Drought Stress(Tissue:root)	13.381
SRR2967015	Control (Tissue:root)	13.691

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.486
SRR9715740	Leave	0.073
SRR9715741	Leave	0.493
SRR9715739	Root	1.182
SRR9715742	Root	4.026
SRR9715743	Root	3.719

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.266
SRR8749028	MeJA induced 9h	0.898
SRR8749029	MeJA induced 9h	0.291
SRR8749030	Uninduced	2.479
SRR8749031	Uninduced	3.320
SRR8749032	Uninduced	1.568

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	11.753
SRR8400027	Control-Root	16.644