Gene detail information of Glyur000215s00017007.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G44430.12.00E-64DNA-binding bromodomain-containing protein
NRXP_004488477.10PREDICTED: uncharacterized protein LOC101504548 [Cicer arietinum]
trEMBLtr|V7BVJ8|V7BVJ8_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW21075.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002153728242765+


Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0003682  chromatin binding

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000215s00017007.1PF00249.26Myb_DNA-binding25752.70E-07
Glyur000215s00017007.1PF00439.20Bromodomain3554353.50E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.703
SRR1783600control12.514
SRR1783602moderate drought stress17.664
SRR1811619moderate drought stress17.839

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.627
DRR006520Root Summer glycyrrhizin high producing strain10.911
DRR006521Root Winter glycyrrhizin high producing strain4.543
DRR006522Root Winter glycyrrhizin high producing strain4.468
DRR006523Root Summer glycyrrhizin low producing strain10.197
DRR006524Root Summer glycyrrhizin low producing strain10.048
DRR006525Leaf Summer glycyrrhizin high producing strain10.608
DRR006526Leaf Summer glycyrrhizin high producing strain10.505

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.594
SRR2868004Drought Stress(Tissue:root)14.425
SRR2967015Control (Tissue:root)15.632

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.378
SRR9715740Leave8.823
SRR9715741Leave9.064
SRR9715739Root6.639
SRR9715742Root11.354
SRR9715743Root10.094

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.762
SRR8749028MeJA induced 9h9.574
SRR8749029MeJA induced 9h6.000
SRR8749030Uninduced8.208
SRR8749031Uninduced15.346
SRR8749032Uninduced10.789

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.206
SRR8400027Control-Root14.190

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved