Gene detail information of Glyur000215s00017030.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60940.1 | 3.00E-167 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_004488472.1 | 0 | PREDICTED: cleavage stimulation factor subunit 1-like [Cicer arietinum] |
| COG | YP_001864889.1 | 5.00E-28 | hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q8L4J2|CTF50_ARATH | 0 | Cleavage stimulation factor subunit 50 {ECO:0000303|PubMed:12379796} |
| trEMBL | tr|G7IGS9|G7IGS9_MEDTR | 0 | Cleavage stimulation factor 50 kDa subunit {ECO:0000313|EMBL:AES66007.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00215 | 193030 | 198950 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000215s00017030.1 | PF00400.27 | WD40 | 123 | 157 | 1.00E-07 |
| Glyur000215s00017030.1 | PF00400.27 | WD40 | 178 | 214 | 9.00E-08 |
| Glyur000215s00017030.1 | PF00400.27 | WD40 | 272 | 295 | 0.043 |
| Glyur000215s00017030.1 | PF00400.27 | WD40 | 311 | 339 | 0.0023 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.186 |
| SRR1783600 | control | 5.195 |
| SRR1783602 | moderate drought stress | 6.987 |
| SRR1811619 | moderate drought stress | 7.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.365 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.389 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.209 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.428 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.278 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.435 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.194 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.497 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.251 |
| SRR2967015 | Control (Tissue:root) | 10.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.599 |
| SRR9715740 | Leave | 10.480 |
| SRR9715741 | Leave | 7.653 |
| SRR9715739 | Root | 1.831 |
| SRR9715742 | Root | 6.735 |
| SRR9715743 | Root | 4.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.825 |
| SRR8749028 | MeJA induced 9h | 6.946 |
| SRR8749029 | MeJA induced 9h | 3.947 |
| SRR8749030 | Uninduced | 5.963 |
| SRR8749031 | Uninduced | 1.872 |
| SRR8749032 | Uninduced | 2.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.440 |
| SRR8400027 | Control-Root | 12.493 |