Gene detail information of Glyur000215s00017034.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G02230.18.00E-96reversibly glycosylated polypeptide 1
NRXP_006856400.11.70E-119hypothetical protein AMTR_s00047p00209120 [Amborella trichopoda]
Swissprottr|O04300|UPTG_PEA4.00E-119Alpha-1,4-glucan-protein synthase [UDP-forming]
trEMBLtr|M5XB89|M5XB89_PRUPE6.00E-150Uncharacterized protein {ECO:0000313|EMBL:EMJ23372.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00215220469223176+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT75


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13379RGP, UTM EC:2.4.1.- 5.4.99.30 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0030244  cellulose biosynthetic process


molecular_function

GO:0016866  intramolecular transferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000215s00017034.1PF03214.8RGP582326.70E-91
Glyur000215s00017034.1PF03214.8RGP2323301.20E-39


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control339.333
SRR1783600control341.452
SRR1783602moderate drought stress118.820
SRR1811619moderate drought stress119.246

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain115.162
DRR006520Root Summer glycyrrhizin high producing strain113.570
DRR006521Root Winter glycyrrhizin high producing strain173.034
DRR006522Root Winter glycyrrhizin high producing strain166.550
DRR006523Root Summer glycyrrhizin low producing strain144.385
DRR006524Root Summer glycyrrhizin low producing strain145.011
DRR006525Leaf Summer glycyrrhizin high producing strain35.176
DRR006526Leaf Summer glycyrrhizin high producing strain36.028

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)136.807
SRR2868004Drought Stress(Tissue:root)78.464
SRR2967015Control (Tissue:root)76.089

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave67.966
SRR9715740Leave51.448
SRR9715741Leave77.547
SRR9715739Root123.321
SRR9715742Root145.627
SRR9715743Root138.333

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h229.222
SRR8749028MeJA induced 9h189.229
SRR8749029MeJA induced 9h169.547
SRR8749030Uninduced101.860
SRR8749031Uninduced68.457
SRR8749032Uninduced86.398

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root126.921
SRR8400027Control-Root139.018

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved