Gene detail information of Glyur000216s00014128.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66770.1 | 4.00E-144 | GRAS family transcription factor |
| NR | XP_004505608.1 | 0 | PREDICTED: scarecrow-like protein 4-like [Cicer arietinum] |
| Swissprot | tr|Q9FL03|SCL4_ARATH | 0 | Scarecrow-like protein 4 |
| trEMBL | tr|G7JSQ4|G7JSQ4_MEDTR | 0 | GRAS family transcription factor {ECO:0000313|EMBL:AES89611.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00216 | 11116 | 13763 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000216s00014128.1 | PF03514.9 | GRAS | 188 | 565 | 2.60E-106 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.168 |
| SRR1783600 | control | 35.278 |
| SRR1783602 | moderate drought stress | 58.999 |
| SRR1811619 | moderate drought stress | 58.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.662 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.644 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.626 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.542 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 77.161 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 77.166 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.158 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.765 |
| SRR2868004 | Drought Stress(Tissue:root) | 34.279 |
| SRR2967015 | Control (Tissue:root) | 38.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.892 |
| SRR9715740 | Leave | 14.507 |
| SRR9715741 | Leave | 14.890 |
| SRR9715739 | Root | 41.910 |
| SRR9715742 | Root | 37.385 |
| SRR9715743 | Root | 39.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.748 |
| SRR8749028 | MeJA induced 9h | 8.886 |
| SRR8749029 | MeJA induced 9h | 2.890 |
| SRR8749030 | Uninduced | 4.941 |
| SRR8749031 | Uninduced | 0.490 |
| SRR8749032 | Uninduced | 0.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 26.458 |
| SRR8400027 | Control-Root | 27.889 |