Gene detail information of Glyur000216s00014131.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16090.1 | 1.00E-132 | RING/U-box superfamily protein |
| NR | XP_006573823.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase synoviolin-like isoform X2 [Glycine max] |
| Swissprot | tr|Q6NPT7|HRD1B_ARATH | 1.00E-172 | ERAD-associated E3 ubiquitin-protein ligase HRD1B {ECO:0000305} |
| trEMBL | tr|I1JAH4|I1JAH4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G43860.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00216 | 30365 | 35846 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10601 | SYVN1, HRD1 | EC:2.3.2.27 | Protein processing in endoplasmic reticulum | map04141 |
| Ubiquitin mediated proteolysis | map04120 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000216s00014131.1 | PF13639.1 | zf-RING_2 | 290 | 329 | 1.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.025 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.075 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.073 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.189 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.118 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.520 |
| SRR2967015 | Control (Tissue:root) | 0.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.062 |
| SRR9715741 | Leave | 0.145 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.021 |
| SRR9715743 | Root | 0.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.062 |
| SRR8749028 | MeJA induced 9h | 0.221 |
| SRR8749029 | MeJA induced 9h | 0.165 |
| SRR8749030 | Uninduced | 0.661 |
| SRR8749031 | Uninduced | 0.156 |
| SRR8749032 | Uninduced | 0.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.036 |
| SRR8400027 | Control-Root | 0.027 |