Gene detail information of Glyur000216s00014135.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G13780.10methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative
NRKHN46449.10Putative methionine--tRNA ligase [Glycine soja]
COGYP_003804586.10methionyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
Swissprottr|Q9ZTS1|SYM_ORYSJ0Probable methionine--tRNA ligase
trEMBLtr|K7LSI4|K7LSI4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G02076.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002164810256255+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01874MARS, metG EC:6.1.1.10 Selenocompound metabolism map00450
Aminoacyl-tRNA biosynthesismap00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006431  methionyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000049  tRNA binding

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004825  methionine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000216s00014135.1PF09334.6tRNA-synt_1g184129.30E-150
Glyur000216s00014135.1PF01588.15tRNA_bind6227174.40E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.495
SRR1783600control26.406
SRR1783602moderate drought stress26.558
SRR1811619moderate drought stress26.556

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain35.270
DRR006520Root Summer glycyrrhizin high producing strain34.871
DRR006521Root Winter glycyrrhizin high producing strain50.384
DRR006522Root Winter glycyrrhizin high producing strain49.384
DRR006523Root Summer glycyrrhizin low producing strain34.530
DRR006524Root Summer glycyrrhizin low producing strain34.558
DRR006525Leaf Summer glycyrrhizin high producing strain29.851
DRR006526Leaf Summer glycyrrhizin high producing strain29.908

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)67.170
SRR2868004Drought Stress(Tissue:root)57.331
SRR2967015Control (Tissue:root)59.771

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave43.247
SRR9715740Leave46.800
SRR9715741Leave41.943
SRR9715739Root3.774
SRR9715742Root37.615
SRR9715743Root37.085

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h109.463
SRR8749028MeJA induced 9h106.102
SRR8749029MeJA induced 9h80.964
SRR8749030Uninduced38.966
SRR8749031Uninduced19.826
SRR8749032Uninduced25.769

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root59.367
SRR8400027Control-Root54.469

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved