Gene detail information of Glyur000216s00014158.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G04590.10sulfite reductase
NRXP_003537728.10PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Glycine max]
COGYP_001518182.10sulfite reductase subunit beta [Acaryochloris marina MBIC11017]
Swissprottr|Q75NZ0|SIR_PEA0Sulfite reductase [ferredoxin], chloroplastic (Precursor)
trEMBLtr|I1LIJ6|I1LIJ6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G09890.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00216161528168103+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00392sir EC:1.8.7.1 Sulfur metabolism map00920


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0020037  heme binding

GO:0050311  sulfite reductase (ferredoxin) activity

GO:0051536  iron-sulfur cluster binding

GO:0051539  4 iron, 4 sulfur cluster binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000216s00014158.1PF03460.12NIR_SIR_ferr1321882.80E-15
Glyur000216s00014158.1PF01077.17NIR_SIR2294066.80E-48
Glyur000216s00014158.1PF03460.12NIR_SIR_ferr4244858.90E-12
Glyur000216s00014158.1PF01077.17NIR_SIR5126504.50E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control71.419
SRR1783600control71.692
SRR1783602moderate drought stress90.147
SRR1811619moderate drought stress89.661

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain83.575
DRR006520Root Summer glycyrrhizin high producing strain82.187
DRR006521Root Winter glycyrrhizin high producing strain24.539
DRR006522Root Winter glycyrrhizin high producing strain23.995
DRR006523Root Summer glycyrrhizin low producing strain75.699
DRR006524Root Summer glycyrrhizin low producing strain75.865
DRR006525Leaf Summer glycyrrhizin high producing strain24.281
DRR006526Leaf Summer glycyrrhizin high producing strain24.195

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)77.855
SRR2868004Drought Stress(Tissue:root)77.158
SRR2967015Control (Tissue:root)65.598

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave47.733
SRR9715740Leave51.500
SRR9715741Leave53.416
SRR9715739Root31.462
SRR9715742Root115.413
SRR9715743Root100.991

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h82.584
SRR8749028MeJA induced 9h115.293
SRR8749029MeJA induced 9h78.890
SRR8749030Uninduced214.041
SRR8749031Uninduced153.506
SRR8749032Uninduced70.894

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root76.324
SRR8400027Control-Root66.031

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved