Gene detail information of Glyur000217s00014847.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G34550.1 | 0 | Protein of unknown function (DUF616) |
| NR | KEH43551.1 | 0 | transmembrane protein [Medicago truncatula] |
| COG | YP_005066426.1 | 8.00E-12 | hypothetical protein [Arthrospira platensis NIES-39] |
| trEMBL | tr|A0A072VPG5|A0A072VPG5_MEDTR | 0 | Transmembrane protein {ECO:0000313|EMBL:KEH43551.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00217 | 90382 | 97894 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000217s00014847.1 | PF04765.8 | DUF616 | 371 | 691 | 3.00E-131 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.961 |
| SRR1783600 | control | 15.193 |
| SRR1783602 | moderate drought stress | 12.089 |
| SRR1811619 | moderate drought stress | 11.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.412 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.105 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.991 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.729 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.980 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.049 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.708 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.067 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.949 |
| SRR2967015 | Control (Tissue:root) | 20.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.954 |
| SRR9715740 | Leave | 10.644 |
| SRR9715741 | Leave | 15.021 |
| SRR9715739 | Root | 1.887 |
| SRR9715742 | Root | 9.179 |
| SRR9715743 | Root | 7.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.297 |
| SRR8749028 | MeJA induced 9h | 22.870 |
| SRR8749029 | MeJA induced 9h | 14.267 |
| SRR8749030 | Uninduced | 8.050 |
| SRR8749031 | Uninduced | 2.795 |
| SRR8749032 | Uninduced | 3.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 25.442 |
| SRR8400027 | Control-Root | 27.684 |