Gene detail information of Glyur000217s00014848.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G54160.17.00E-76O-methyltransferase 1
NRBAA13683.10O-methyltransferase [Glycyrrhiza echinata]
COGYP_001869557.12.00E-33O-methyltransferase family protein [Nostoc punctiforme PCC 73102]
Swissprottr|P93324|CHOMT_MEDSA0Isoliquiritigenin 2'-O-methyltransferase
trEMBLtr|Q96424|Q96424_GLYEC0O-methyltransferase {ECO:0000313|EMBL:BAA13683.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00217103388114312-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13066E2.1.1.68, COMT EC:2.1.1.68 Phenylpropanoid biosynthesis map00940


Gene Ontology

molecular_function

GO:0008168  methyltransferase activity

GO:0008171  O-methyltransferase activity

GO:0046983  protein dimerization activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000217s00014848.1PF08100.6Dimerisation40931.80E-18
Glyur000217s00014848.1PF00891.13Methyltransf_2962912.10E-68
Glyur000217s00014848.1PF08100.6Dimerisation3363891.60E-17
Glyur000217s00014848.1PF00891.13Methyltransf_24136145.00E-69


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control77.983
SRR1783600control76.970
SRR1783602moderate drought stress83.571
SRR1811619moderate drought stress82.545

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.223
DRR006520Root Summer glycyrrhizin high producing strain0.214
DRR006521Root Winter glycyrrhizin high producing strain4.825
DRR006522Root Winter glycyrrhizin high producing strain4.533
DRR006523Root Summer glycyrrhizin low producing strain0.229
DRR006524Root Summer glycyrrhizin low producing strain0.286
DRR006525Leaf Summer glycyrrhizin high producing strain5.172
DRR006526Leaf Summer glycyrrhizin high producing strain5.406

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)184.354
SRR2868004Drought Stress(Tissue:root)171.883
SRR2967015Control (Tissue:root)175.443

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.751
SRR9715740Leave0.494
SRR9715741Leave2.564
SRR9715739Root9.862
SRR9715742Root13.525
SRR9715743Root11.770

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h286.370
SRR8749028MeJA induced 9h779.157
SRR8749029MeJA induced 9h396.615
SRR8749030Uninduced624.271
SRR8749031Uninduced741.784
SRR8749032Uninduced475.493

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root126.242
SRR8400027Control-Root78.692

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved