Gene detail information of Glyur000217s00014863.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G32915.17.00E-30
NRXP_003536373.11.97E-71PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like isoform X1 [Glycine max]
COGYP_007163492.12.00E-14aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [Cyanobacterium aponinum PCC 10605]
Swissprottr|D7STK2|GATC_VITVI3.00E-50Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial {ECO:0000255|HAMAP-Rule:MF_03149} (Precursor)
trEMBLtr|K7LKQ2|K7LKQ2_SOYBN7.00E-72Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial {ECO:0000256|HAMAP-Rule:MF_03149}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00217209686211530-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02435gatC, GATC EC:6.3.5.6 6.3.5.7 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006450  regulation of translational fidelity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000217s00014863.1PF02686.10Glu-tRNAGln701401.90E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control41.505
SRR1783600control41.396
SRR1783602moderate drought stress21.285
SRR1811619moderate drought stress20.983

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.147
DRR006520Root Summer glycyrrhizin high producing strain25.952
DRR006521Root Winter glycyrrhizin high producing strain31.922
DRR006522Root Winter glycyrrhizin high producing strain31.251
DRR006523Root Summer glycyrrhizin low producing strain22.288
DRR006524Root Summer glycyrrhizin low producing strain22.309
DRR006525Leaf Summer glycyrrhizin high producing strain43.121
DRR006526Leaf Summer glycyrrhizin high producing strain42.928

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.041
SRR2868004Drought Stress(Tissue:root)36.239
SRR2967015Control (Tissue:root)37.044

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave65.893
SRR9715740Leave79.119
SRR9715741Leave52.095
SRR9715739Root3.126
SRR9715742Root6.982
SRR9715743Root6.800

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h31.282
SRR8749028MeJA induced 9h22.709
SRR8749029MeJA induced 9h22.043
SRR8749030Uninduced19.826
SRR8749031Uninduced18.811
SRR8749032Uninduced13.339

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root43.347
SRR8400027Control-Root44.466

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved