Gene detail information of Glyur000218s00011610.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48150.2 | 0 | GRAS family transcription factor |
| NR | XP_003617966.1 | 0 | Chitin-inducible gibberellin-responsive protein [Medicago truncatula] |
| Swissprot | tr|Q9LDL7|PAT1_ARATH | 0 | Scarecrow-like transcription factor PAT1 |
| trEMBL | tr|G7KEQ0|G7KEQ0_MEDTR | 0 | GRAS family transcription factor {ECO:0000313|EMBL:AET00925.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00218 | 82489 | 84126 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000218s00011610.1 | PF03514.9 | GRAS | 175 | 545 | 3.80E-137 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.419 |
| SRR1783600 | control | 26.091 |
| SRR1783602 | moderate drought stress | 27.191 |
| SRR1811619 | moderate drought stress | 27.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.870 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.620 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.158 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.084 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.653 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.273 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.187 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.611 |
| SRR2868004 | Drought Stress(Tissue:root) | 47.634 |
| SRR2967015 | Control (Tissue:root) | 56.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.858 |
| SRR9715740 | Leave | 6.621 |
| SRR9715741 | Leave | 6.694 |
| SRR9715739 | Root | 26.612 |
| SRR9715742 | Root | 38.497 |
| SRR9715743 | Root | 35.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.515 |
| SRR8749028 | MeJA induced 9h | 6.186 |
| SRR8749029 | MeJA induced 9h | 5.966 |
| SRR8749030 | Uninduced | 2.494 |
| SRR8749031 | Uninduced | 0.634 |
| SRR8749032 | Uninduced | 0.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.147 |
| SRR8400027 | Control-Root | 14.583 |