Gene detail

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Gene detail information of Glyur000218s00011624.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07820.1	1.00E-94	Pectin lyase-like superfamily protein
NR	XP_003544118.1	0	PREDICTED: polygalacturonase-like isoform X1 [Glycine max]
COG	YP_006284264.1	6.00E-18	Polygalacturonase [Pectobacterium sp. SCC3193]
Swissprot	tr\|Q40312\|PGLR_MEDSA	5.00E-172	Polygalacturonase (Precursor)
trEMBL	tr\|I1M684\|I1M684_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G00930.1}

Sequence

Transcript Sequence

>Glyur000218s00011624.1
ATGGAGATGAAGTTCAGTATTGCAACAATTGTTTTATGCTTATTGGTGGCTATGTCCACTGGGATAGCTCAGTCTACCGTCCATGATATAAAACAATTTGGAGGAGCACCAAATGCAGATATAACACAGGCCTTCACAAAAGCTTGGACAGCAGCATGTGGATCAACAACTGCAAGCAAAATTTCGATTCCTAGTGGGACATATAAGATGAATGCAGTAGAAGTAAAGGGTCCTTGTAAGGCTCCCATTGAAATTCAGGTTGATGGCACAATTCAAGCACCGGCAAACCCTGATGCACTCAACGGGGCTGATCAATGGGTTAAAATTCAATATGCTGACCATATAACCTTATCAGGTAAAGGTGACAGCAAGAACTTTCATGTCAATGTTTTGGGTTGCAACAACTTCACATTTGATGGTTTCACCATTAGTGCTCCGGCTACAAGCCTCAACACAGATGGGATCCACATTGGAAGATCAACNGATGTGAAGGTTCTTAACACGAACATTGCTACCGGAGATGACTGCGTCTCGTTGGGAGATGGCAGCAAACGAATAACCGTCCAGAATGTTAACTGTGGACCNGGTCACGGCATTAGTGTTGGAAGCTTGGGGAAGTACCCTGAAGAACAGCCTGTTGAAAATCTTATAGTCAAGAACTGCACCATGAAAAATACTGATAATGGTGTGAGGATTAAGACTTGGCCTAGTGCTCCAGGAACTGCTCCCATTACCGATATGCATTTTGAAGATATCACCATGATTGATGTCATGAACCCGGTGATCATCGACCAAGAGTATTGTCCTTGGAACCAGTGTTCAAAACAGGTTCCATCAAAAATAAAGATTAGCAAAGTTACCTTCAAGAACATTAAGGGCACTTCAAAGAGCAAGGAAGGAGTGGTTCTCATATGTAGCAAGGGTGTACCATGTGAGGGTGTGGAACTAAGTAATATTTCTCTTACATTCAACGGAGCGCCAACAACTGCTAAGTGTCATAATGTCAAGCCCATTATTACAGGACAAGCTCCTACTTGCACTGCTTCTGCTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00218	133306	135196	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01213	E3.2.1.67	EC:3.2.1.67	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000218s00011624.1	PF00295.12	Glyco_hydro_28	53	121	2.40E-09
Glyur000218s00011624.1	PF00295.12	Glyco_hydro_28	122	336	3.00E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.030
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.103
DRR006520	Root Summer glycyrrhizin high producing strain	0.102
DRR006521	Root Winter glycyrrhizin high producing strain	0.105
DRR006522	Root Winter glycyrrhizin high producing strain	0.041
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.176
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.255

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.001
SRR2868004	Drought Stress(Tissue:root)	0.004
SRR2967015	Control (Tissue:root)	0.052

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.051
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.002
SRR8749028	MeJA induced 9h	0.003
SRR8749029	MeJA induced 9h	0.146
SRR8749030	Uninduced	0.043
SRR8749031	Uninduced	0.073
SRR8749032	Uninduced	0.039

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.000
SRR8400027	Control-Root	0.000