Gene detail information of Glyur000218s00011625.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G18905.11.00E-130Transducin/WD40 repeat-like superfamily protein
NRXP_004491601.10PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like isoform X2 [Cicer arietinum]
COGNP_927297.11.00E-12hypothetical protein gll4351 [Gloeobacter violaceus PCC 7421]
Swissprottr|O22467|MSI1_ARATH8.00E-11Histone-binding protein MSI1
trEMBLtr|I1JJS2|I1JJS2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G47740.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00218136096141045-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000218s00011625.1PF00400.27WD402522882.10E-07
Glyur000218s00011625.1PF00400.27WD403844202.50E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.621
SRR1783600control18.941
SRR1783602moderate drought stress19.060
SRR1811619moderate drought stress18.987

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.998
DRR006520Root Summer glycyrrhizin high producing strain31.474
DRR006521Root Winter glycyrrhizin high producing strain38.785
DRR006522Root Winter glycyrrhizin high producing strain37.778
DRR006523Root Summer glycyrrhizin low producing strain32.301
DRR006524Root Summer glycyrrhizin low producing strain31.608
DRR006525Leaf Summer glycyrrhizin high producing strain18.144
DRR006526Leaf Summer glycyrrhizin high producing strain17.791

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)37.248
SRR2868004Drought Stress(Tissue:root)33.740
SRR2967015Control (Tissue:root)32.013

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave24.327
SRR9715740Leave34.021
SRR9715741Leave29.064
SRR9715739Root12.946
SRR9715742Root24.956
SRR9715743Root22.026

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h61.999
SRR8749028MeJA induced 9h34.418
SRR8749029MeJA induced 9h41.859
SRR8749030Uninduced13.116
SRR8749031Uninduced10.805
SRR8749032Uninduced13.222

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root44.169
SRR8400027Control-Root37.088

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved