Gene detail

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Gene detail information of Glyur000218s00011637.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54160.1	2.00E-118	O-methyltransferase 1
NR	AFK39562.1	0	unknown [Lotus japonicus]
COG	YP_007063273.1	3.00E-40	hydroxyneurosporene-O-methyltransferase [Synechococcus sp. PCC 6312]
Swissprot	tr\|P28002\|COMT1_MEDSA	3.00E-173	Caffeic acid 3-O-methyltransferase
trEMBL	tr\|I3SH20\|I3SH20_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK39562.1}

Sequence

Transcript Sequence

>Glyur000218s00011637.1
AATGACTATTGATCAGTCTCCTGTGTTTTGGTTGGAAAGTTCAAGNCGTCAACAATTGGTTATGTGTATATATATAGTAACATAACATTGAATATATAGCAGCCAACAACACAAGCACAGCTATGGAATATGATCATCACGGGAAGCAGCAGGTATCTCATGATAATTGTGACGANGATGAAGCAGCGTTCTTGTTCGCCATGGAACTAGCCGGCGCATCCGCGGTCCCAATGGTCCTAAAGTCAGCTTTGGATCTTGGNATAATAGAAGCCATAACCAAGGCAGGTCCAGGAGCTTCCCTTTCCGCTTCTCACATTGNTTCTCAGATCCCTTCCATCAAGAACCCGGACGCACCCGCCATGCTGGACCGCTTGTTGCGCCTCTTGGCTAGCTACAACATCCTCACTGCAGCAGCTTCTAGTACTGATCATCGTGATGGAGATGGAGATCCTGCTGCTGAAAGAGTTGTAGTAGAGTATGGTCTTCACCCTCNCGCCAAATACTTTGTCAACAATAATCAAGATGGTCTCTCCATGGTTTCTTCCTTTCTCATGCAACACGACAAAGTCCTCAAAGACATGTGGTACCACTTGACGGATTCAATTCAGGAGGGTGGCCTTCCATTTAACAATGCTTATGGAATGACTGCCTTTGAATTCCATGGCACAAATCCAAGGTTCAACAACCTTTTCAACAAGGGGATGTCTAATTTCTCCAGCATCGTGATGAAGAAAATCCTTGAGACCTATACAGGCTTTGAGGGTGTTGGATCTGTGGTTGATGTTGGGGGTGGGACTGGAGCTATCATTAACATGATTGTCTCTAAGTATCCCACCATAAAGGGCATTAATTTTGACTTGCCCCATGTGATTAAAGAAGCTCCACCTTATCCAGGTGTGGAGCATATTGGTGGAGACATGTTTGTCAGTGTTCCAAAAGCTGATGTCATTTTCATGAAGTGGATATGTCACGATTGGAATGATGAGCAATGCTTGAAATTTNTGAAGAACTGCTATGATTCCCTTCCTGAGACAGGGAAGGTGATCATTGCTGAGTACATTATTCCGGCGTTCCCGGACTCTAACTTGGCCTCAAAGTGTGTGTTTCAAATGGATGTTATCATGCTGTGTCATAGCTCGGGTGGAAGAGAGAGAACAGAGAAAGAGTATGAGGCTTTGGCTAAGGGTGCTGGTTTCCAAGGTTTCAGAGTTGCTTGCCGTGCTTCAAACCTCTCTGTCATGGAATTTCTTAAGAAGGCTTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00218	203828	207656	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13066	E2.1.1.68, COMT	EC:2.1.1.68	Phenylpropanoid biosynthesis	map00940

Gene Ontology

molecular_function

GO:0008168 methyltransferase activity

GO:0008171 O-methyltransferase activity

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000218s00011637.1	PF08100.6	Dimerisation	37	89	1.50E-19
Glyur000218s00011637.1	PF00891.13	Methyltransf_2	118	354	7.10E-91

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.318
SRR1783600	control	0.288
SRR1783602	moderate drought stress	2.158
SRR1811619	moderate drought stress	2.192

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.149
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.998

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	25.156
SRR2868004	Drought Stress(Tissue:root)	52.599
SRR2967015	Control (Tissue:root)	15.836

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	24.283
SRR9715740	Leave	7.937
SRR9715741	Leave	54.164
SRR9715739	Root	0.743
SRR9715742	Root	1.661
SRR9715743	Root	1.373

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.486
SRR8749028	MeJA induced 9h	102.247
SRR8749029	MeJA induced 9h	16.588
SRR8749030	Uninduced	552.790
SRR8749031	Uninduced	442.321
SRR8749032	Uninduced	281.426

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	16.328
SRR8400027	Control-Root	10.892