Gene detail information of Glyur000218s00011642.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G48230.20acetoacetyl-CoA thiolase 2
NRXP_004491616.10PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Cicer arietinum]
COGYP_003585115.14.00E-164acetoacetyl-CoA thiolase [Zunongwangia profunda SM-A87]
Swissprottr|Q8S4Y1|THIC1_ARATH0Acetyl-CoA acetyltransferase, cytosolic 1
trEMBLtr|I1JJT8|I1JJT8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G47860.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00218225270229852-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00626E2.3.1.9, atoB EC:2.3.1.9 Carbon metabolism map01200
Fatty acid metabolismmap01212
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Propanoate metabolismmap00640
Butanoate metabolismmap00650
Carbon fixation pathways in prokaryotesmap00720
Fatty acid degradationmap00071
Synthesis and degradation of ketone bodiesmap00072
Valine, leucine and isoleucine degradationmap00280
Lysine degradationmap00310
Tryptophan metabolismmap00380
Terpenoid backbone biosynthesismap00900
Benzoate degradationmap00362
Two-component systemmap02020


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000218s00011642.3PF00108.18Thiolase_N182782.50E-95
Glyur000218s00011642.3PF02803.13Thiolase_C2884082.20E-45


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control124.097
SRR1783600control123.389
SRR1783602moderate drought stress58.864
SRR1811619moderate drought stress57.915

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain134.825
DRR006520Root Summer glycyrrhizin high producing strain133.501
DRR006521Root Winter glycyrrhizin high producing strain43.496
DRR006522Root Winter glycyrrhizin high producing strain42.108
DRR006523Root Summer glycyrrhizin low producing strain69.275
DRR006524Root Summer glycyrrhizin low producing strain68.174
DRR006525Leaf Summer glycyrrhizin high producing strain23.678
DRR006526Leaf Summer glycyrrhizin high producing strain23.687

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)310.321
SRR2868004Drought Stress(Tissue:root)120.005
SRR2967015Control (Tissue:root)127.716

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave64.752
SRR9715740Leave52.077
SRR9715741Leave59.202
SRR9715739Root123.249
SRR9715742Root212.454
SRR9715743Root190.963

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h67.706
SRR8749028MeJA induced 9h67.402
SRR8749029MeJA induced 9h64.295
SRR8749030Uninduced25.929
SRR8749031Uninduced20.490
SRR8749032Uninduced32.602

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root239.784
SRR8400027Control-Root206.811

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved