Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000219s00011573.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G21330.1	2.00E-54	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	XP_006597180.1	4.83E-177	PREDICTED: transcription factor bHLH87-like [Glycine max]
Swissprot	tr\|Q8S3D2\|BH087_ARATH	7.00E-85	Transcription factor bHLH87
trEMBL	tr\|K7M941\|K7M941_SOYBN	2.00E-177	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G02531.1}

Sequence

Transcript Sequence

>Glyur000219s00011573.1
ATGGATAGTCTGAGTTGGGATGANTCACAACTTGTTGCAAACATACCAATCTTGTGGAGCACTCAGCCACAAGACCTTGAAAGAGACTACTCCATGCCCAACACAAGTCCAAGTGTTGTTAGTTATCAGATGCAACAAGGGATGCAGAATAAGGTGCAAACAGGCCATCTATATCCTAATATTTCTGNAAAGGTGAGCAATGTGGCCAGTACTTCTGAGATAATGAGGATGAATATGATGCCAAACACAAATCTTTCACACAGAACAGAAGCCATGCATATGCANGTGAAATCCAGTTGGGAATTAGAAGCTTTAACATCCCAATCATGCCAGTCCCTTTCAGTCAATATTATGAACCCAACAAATACTAGCAATTATGTGCCAGATTTCANCAGGGCCCACCAGCAGCANNAGCAACAACAACTCATCAACAGCAAGGCTANCTGCTCTCTTGATCAATCACTTGATTGTTTGCTTTCAGCCACTAATAGTAGTAACAAAANCGACACNTCTGTCGAAGATGATGGGATCTCCATGATCTTTTCTGACTGCAGAAGAAACTTATGGAACAACAACAACTTCAGTTATGGCAGCAGTGCAGNTTCCTCTGGTGAATCTGATCAGAGCAATGCTGCCAATTATGCTAGAAACAAAGACATGCAGCAGCATCAACTAGAGGAATCAGTGTCTCAAAGTTCCTCAGATCAAGCCAAAATTATAGATCATCATTCTAAGGTTATTCATTGCACAAAAAGGATCAAAGTTGCTTCCAGTGATCCCTACTTCAGTATTGGTCAGAATTCTTCTTCTCATACTGAAGGTGGTTTCAAGCTTATCTCAGAGAATCCATGTCCAACAAAGTCCAAGAAACCCAGATGGGATAAGCGTCCTGGTTCATCAAATATCAATTTCCAGCAGCCAAATTCTTCATCAGTATCTTCATATTCCAATATGGAAGAGCCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGNTATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGGTTGGAAGTGGTGGAAAAGCCTAAGAGGAAGAATGTGAAGATATCAACTGATCCACAAACTGTGGCTGCAAGACAGAGGAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTCCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGATCACAGGTCAAGGCACTAGAGAATCTAGGGAACAAGATTGACACTATGAATTGTNCTCCTACTAGCATAGCCTTCTCTTTCAACCCTTCTTTTGATCCCATGCAAACCCATTTCCCCATCCAAAACCCTAACGGCCCCATCCAATATTCTCNGGGTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00219	102861	104246	-

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000219s00011573.1	PF00010.21	HLH	368	408	2.40E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.053
SRR1783600	control	0.053
SRR1783602	moderate drought stress	0.137
SRR1811619	moderate drought stress	0.132

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.285
DRR006520	Root Summer glycyrrhizin high producing strain	0.284
DRR006521	Root Winter glycyrrhizin high producing strain	0.074
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.080
DRR006524	Root Summer glycyrrhizin low producing strain	0.080
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.134
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.133

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.376
SRR2868004	Drought Stress(Tissue:root)	2.487
SRR2967015	Control (Tissue:root)	1.740

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.560
SRR9715740	Leave	0.148
SRR9715741	Leave	0.629
SRR9715739	Root	0.000
SRR9715742	Root	0.067
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.467
SRR8749028	MeJA induced 9h	4.085
SRR8749029	MeJA induced 9h	2.840
SRR8749030	Uninduced	3.126
SRR8749031	Uninduced	12.998
SRR8749032	Uninduced	3.652

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.777
SRR8400027	Control-Root	1.797