Gene detail information of Glyur000219s00011577.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G73040.1 | 1.00E-62 | Mannose-binding lectin superfamily protein |
| NR | XP_003597652.1 | 0 | Agglutinin alpha chain [Medicago truncatula] |
| COG | YP_005442893.1 | 4.00E-09 | hypothetical protein CLDAP_29560 [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| Swissprot | tr|Q9SSM3|JAL19_ARATH | 6.00E-73 | Jacalin-related lectin 19 |
| trEMBL | tr|K7M944|K7M944_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G02580.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00219 | 127432 | 132366 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000219s00011577.1 | PF12937.2 | F-box-like | 54 | 88 | 1.10E-05 |
| Glyur000219s00011577.1 | PF01419.12 | Jacalin | 598 | 725 | 1.40E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.116 |
| SRR1783600 | control | 15.057 |
| SRR1783602 | moderate drought stress | 17.062 |
| SRR1811619 | moderate drought stress | 16.931 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.529 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.139 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.777 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.972 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.845 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.961 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.084 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.825 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.452 |
| SRR2967015 | Control (Tissue:root) | 16.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.613 |
| SRR9715740 | Leave | 16.020 |
| SRR9715741 | Leave | 20.262 |
| SRR9715739 | Root | 5.359 |
| SRR9715742 | Root | 24.296 |
| SRR9715743 | Root | 20.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.140 |
| SRR8749028 | MeJA induced 9h | 8.058 |
| SRR8749029 | MeJA induced 9h | 5.844 |
| SRR8749030 | Uninduced | 7.389 |
| SRR8749031 | Uninduced | 8.568 |
| SRR8749032 | Uninduced | 6.835 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.862 |
| SRR8400027 | Control-Root | 20.229 |