Gene detail information of Glyur000219s00011587.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16500.1 | 7.00E-59 | phytochrome-associated protein 1 |
| NR | XP_007150599.1 | 1.15E-148 | hypothetical protein PHAVU_005G165600g [Phaseolus vulgaris] |
| Swissprot | tr|Q8LAL2|IAA26_ARATH | 1.00E-73 | Auxin-responsive protein IAA26 |
| trEMBL | tr|V7BZR6|V7BZR6_PHAVU | 4.00E-149 | Auxin-induced protein {ECO:0000256|RuleBase:RU004549} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00219 | 183105 | 186223 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
| EAR motif-containing Proteins | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000219s00011587.1 | PF02309.11 | AUX_IAA | 85 | 319 | 1.10E-49 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 93.865 |
| SRR1783600 | control | 94.070 |
| SRR1783602 | moderate drought stress | 208.140 |
| SRR1811619 | moderate drought stress | 211.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 338.219 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 335.184 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.211 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.874 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 287.587 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 288.155 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.280 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 82.431 |
| SRR2868004 | Drought Stress(Tissue:root) | 96.184 |
| SRR2967015 | Control (Tissue:root) | 118.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 32.652 |
| SRR9715740 | Leave | 34.496 |
| SRR9715741 | Leave | 39.531 |
| SRR9715739 | Root | 99.979 |
| SRR9715742 | Root | 171.541 |
| SRR9715743 | Root | 153.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 41.537 |
| SRR8749028 | MeJA induced 9h | 33.405 |
| SRR8749029 | MeJA induced 9h | 17.850 |
| SRR8749030 | Uninduced | 14.124 |
| SRR8749031 | Uninduced | 2.341 |
| SRR8749032 | Uninduced | 6.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 159.475 |
| SRR8400027 | Control-Root | 188.874 |