Gene detail information of Glyur000219s00011589.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G51940.10protein kinase family protein / peptidoglycan-binding LysM domain-containing protein
NRBAI79272.10LysM type receptor kinase [Lotus japonicus]
COGYP_003270695.13.00E-21serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
Swissprottr|F4IB81|LYK3_ARATH0LysM domain receptor-like kinase 3 (Precursor)
trEMBLtr|D3KTZ5|D3KTZ5_LOTJA0LysM type receptor kinase {ECO:0000313|EMBL:BAI79272.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00219202882207053+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.1.3
Carbohydrate-Active enzymes FamilyCBM50


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000219s00011589.1PF01476.15LysM1722097.20E-07
Glyur000219s00011589.1PF07714.12Pkinase_Tyr3765774.80E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.214
SRR1783600control0.134
SRR1783602moderate drought stress0.115
SRR1811619moderate drought stress0.167

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.433
DRR006520Root Summer glycyrrhizin high producing strain0.567
DRR006521Root Winter glycyrrhizin high producing strain0.499
DRR006522Root Winter glycyrrhizin high producing strain0.398
DRR006523Root Summer glycyrrhizin low producing strain0.361
DRR006524Root Summer glycyrrhizin low producing strain0.325
DRR006525Leaf Summer glycyrrhizin high producing strain0.329
DRR006526Leaf Summer glycyrrhizin high producing strain0.322

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.307
SRR2868004Drought Stress(Tissue:root)0.995
SRR2967015Control (Tissue:root)0.788

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.190
SRR9715740Leave0.012
SRR9715741Leave0.680
SRR9715739Root0.000
SRR9715742Root0.554
SRR9715743Root0.191

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.817
SRR8749028MeJA induced 9h0.374
SRR8749029MeJA induced 9h0.817
SRR8749030Uninduced0.706
SRR8749031Uninduced0.459
SRR8749032Uninduced1.088

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.130
SRR8400027Control-Root0.369

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved