Gene detail information of Glyur000219s00011597.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16350.1 | 2.00E-85 | Homeodomain-like superfamily protein |
| NR | XP_007150607.1 | 0 | hypothetical protein PHAVU_005G166300g [Phaseolus vulgaris] |
| Swissprot | tr|Q2V9B0|MY1R1_SOLTU | 8.00E-32 | Transcription factor MYB1R1 |
| trEMBL | tr|V7BX57|V7BX57_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW22602.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00219 | 241250 | 247194 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
| EAR motif-containing Proteins | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000219s00011597.1 | PF00249.26 | Myb_DNA-binding | 107 | 151 | 6.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.319 |
| SRR1783600 | control | 7.589 |
| SRR1783602 | moderate drought stress | 14.413 |
| SRR1811619 | moderate drought stress | 14.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.556 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.323 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.292 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.319 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.601 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.271 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.553 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.736 |
| SRR2868004 | Drought Stress(Tissue:root) | 25.015 |
| SRR2967015 | Control (Tissue:root) | 27.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 68.737 |
| SRR9715740 | Leave | 74.628 |
| SRR9715741 | Leave | 91.882 |
| SRR9715739 | Root | 37.386 |
| SRR9715742 | Root | 67.678 |
| SRR9715743 | Root | 59.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.536 |
| SRR8749028 | MeJA induced 9h | 47.807 |
| SRR8749029 | MeJA induced 9h | 30.046 |
| SRR8749030 | Uninduced | 56.969 |
| SRR8749031 | Uninduced | 63.972 |
| SRR8749032 | Uninduced | 62.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.856 |
| SRR8400027 | Control-Root | 25.315 |