Gene detail information of Glyur000220s00014786.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35670.1 | 3.00E-75 | Pectin lyase-like superfamily protein |
| NR | XP_004498965.1 | 3.65E-175 | PREDICTED: probable polygalacturonase At3g15720-like [Cicer arietinum] |
| COG | YP_003391696.1 | 1.00E-24 | glycoside hydrolase family 28 [Spirosoma linguale DSM 74] |
| Swissprot | tr|Q9LW07|PGLR3_ARATH | 1.00E-80 | Probable polygalacturonase At3g15720 (Precursor) |
| trEMBL | tr|G7I6Z4|G7I6Z4_MEDTR | 4.00E-170 | Polygalacturonase {ECO:0000313|EMBL:AES59005.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00220 | 222695 | 225696 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000220s00014786.1 | PF00295.12 | Glyco_hydro_28 | 71 | 378 | 6.80E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.092 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.005 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.078 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.039 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.060 |
| SRR8749028 | MeJA induced 9h | 0.120 |
| SRR8749029 | MeJA induced 9h | 0.129 |
| SRR8749030 | Uninduced | 0.015 |
| SRR8749031 | Uninduced | 0.221 |
| SRR8749032 | Uninduced | 0.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.001 |