Gene detail information of Glyur000220s00014788.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G11170.10DEAD/DEAH box RNA helicase family protein
NRXP_003522620.10PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X1 [Glycine max]
COGYP_925783.17.00E-67DEAD/DEAH box helicase [Nocardioides sp. JS614]
Swissprottr|Q9LFN6|RH56_ARATH0DEAD-box ATP-dependent RNA helicase 56
trEMBLtr|I1JUD5|I1JUD5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G07180.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00220228428235272-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12812UAP56, BAT1, SUB2 EC:3.6.4.13 Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015
Influenza Amap05164


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000220s00014788.1PF00270.24DEAD622222.10E-35
Glyur000220s00014788.1PF00271.26Helicase_C2933692.70E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control63.057
SRR1783600control62.781
SRR1783602moderate drought stress59.605
SRR1811619moderate drought stress59.339

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain84.503
DRR006520Root Summer glycyrrhizin high producing strain82.609
DRR006521Root Winter glycyrrhizin high producing strain208.545
DRR006522Root Winter glycyrrhizin high producing strain203.251
DRR006523Root Summer glycyrrhizin low producing strain60.380
DRR006524Root Summer glycyrrhizin low producing strain60.124
DRR006525Leaf Summer glycyrrhizin high producing strain67.357
DRR006526Leaf Summer glycyrrhizin high producing strain67.399

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)104.558
SRR2868004Drought Stress(Tissue:root)98.165
SRR2967015Control (Tissue:root)100.259

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave66.890
SRR9715740Leave94.810
SRR9715741Leave92.278
SRR9715739Root64.369
SRR9715742Root82.810
SRR9715743Root75.903

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h66.412
SRR8749028MeJA induced 9h53.194
SRR8749029MeJA induced 9h40.665
SRR8749030Uninduced26.952
SRR8749031Uninduced15.260
SRR8749032Uninduced19.460

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root111.829
SRR8400027Control-Root94.306

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved